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Report for Sequence Feature Glyma10g01571

Feature Type:gene_model
Chromosome:Gm10
Start:1144363
stop:1145893
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g01571
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66350AT Annotation by Michelle Graham. TAIR10: RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511 SoyBaseE_val: 1.00E-36ISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009938GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010325GO-bp Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0048444GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis SoyBaseN/AISS
GO:2000377GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03514PFAM GRAS family transcription factor JGI ISS
UniRef100_G7ICX5UniRef Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Medicago truncatula RepID=G7ICX5_MEDTR SoyBaseE_val: 9.00E-168ISS
UniRef100_UPI000233C384UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C384 related cluster n=1 Tax=unknown RepID=UPI000233C384 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g01571
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g01571 not represented in the dataset
Glyma10g01571 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01571
ParalogEvidenceComments
Glyma02g01530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01571 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g012500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g01571
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g01571
>Glyma10g01571.1   sequence type=CDS   gene model=Glyma10g01571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTACTAGGAGGGATAAATACTTTCCCTACATCTTCAGAGAAAAACCAGAAGCAACAATATGATTTCAATTTTGATCCCTTGATGTTAGAGGAGTTCAACTTTGTACTTGTTCATCAACCAAAGCAATCTCTTCAAGAAATCAAGGAACCAAAGAAGAATGAACAGGTTCTACCATCTTCTATAGCATCATTGGAGCTTCTGAGCAATTATGGAAGCAGGTTCAAGAGGCTAGGGAAGCAAAACATCATCGATAGTAATGTTCAAACTTGTGTGAGTACTCCTCAGAAGTTGTCAACTGAAGAAATAATAAGATTGGCTGTAGCAAGGTATATTCAACACTCTACACAAAGGCATGAAGATGTTTGCATCCCCATGCACCCTTACCGATTTGGTCTTGGAGTTTTATCCAAAGAACTCAGTGATGGTGCCGTTCAGAGAGTTGTTTTTCATTTCGCTCAAGCACTACAAGAAAGAATCAGAAGAGAAACTATAGGAAAGTTGACACTGAACAAGCTTAAGATGGATACTAACATGGCTGTTGCATGCCATCAAAAAATTCCTTTCAATCAAATGATGCAGTTTTCTGGGGTGCAAGCCATAGTGGAAAATGTTGCATCAAAAACCAAAATTCATCTGATAAACCTTGATATTGGATGTGGAGTGCAATGCATGGCTTTGATGCAAGCACTGGCTGAGAGACAGGAAGAGCAAGTTGAGATTCTGAAGATAACTGCCATTGGACTTCAAGGCAAGACCGAGCCAGAAAAGACAGGGAAAAGGTTAGTGAGTTTTGCTGAATCCTTAAACTTGCCCTTTTTATATAAGGTAGTTTTTGTCACAAGCATCATAGAGATCAAGGTAGAGCAATTTGGCATTGAAGATAATGAAGCTGTAGCTGTATATTCTCCTTATATGCTGAGGACTATGGTGTCGGATTCTGATTCCTTGGAACACTTGATTCGGGTGATGAGAAAAATCAGACCAAGTATAATGATAATTCTTGAGTTGGAAGCAAAGCATCATTCACCCACCTTTGTGAATCGCTTCATTGAGGCATTGTTCTTCTATTCAGCATTTTCTGACTGCATTGAGACCTGCATGAAGCAGGATTATGAATGCAGAATGAGAATTGAGGGAATATTATCAGAAGGGATACGAAACATTGTTGCTATGGAAGATGGAGAAAGGATGGTTAGGAATGTGAAGATAGATGTTTGGAGAAGATTCTTTGCAAGGTATAGAATGTTTGCGTGTGGGAATTTTTGTACTGTGGACAGAAACAGGAAGTGTCTAATATTTGGATTGAAGGGGACCCCAATTCATTCAATCTCGGTTTGGAAGTTTCTTTGA
Predicted protein sequences of Glyma10g01571
>Glyma10g01571.1   sequence type=predicted peptide   gene model=Glyma10g01571   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLGGINTFPTSSEKNQKQQYDFNFDPLMLEEFNFVLVHQPKQSLQEIKEPKKNEQVLPSSIASLELLSNYGSRFKRLGKQNIIDSNVQTCVSTPQKLSTEEIIRLAVARYIQHSTQRHEDVCIPMHPYRFGLGVLSKELSDGAVQRVVFHFAQALQERIRRETIGKLTLNKLKMDTNMAVACHQKIPFNQMMQFSGVQAIVENVASKTKIHLINLDIGCGVQCMALMQALAERQEEQVEILKITAIGLQGKTEPEKTGKRLVSFAESLNLPFLYKVVFVTSIIEIKVEQFGIEDNEAVAVYSPYMLRTMVSDSDSLEHLIRVMRKIRPSIMIILELEAKHHSPTFVNRFIEALFFYSAFSDCIETCMKQDYECRMRIEGILSEGIRNIVAMEDGERMVRNVKIDVWRRFFARYRMFACGNFCTVDRNRKCLIFGLKGTPIHSISVWKFL*






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