Report for Sequence Feature Glyma10g01560
Feature Type: gene_model
Chromosome: Gm10
Start: 1140354
stop: 1141650
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g01560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G47360 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 58 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19437820-19438731 FORWARD LENGTH=303
SoyBase E_val: 7.00E-56 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1L7P2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7P2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g01560
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g01560
Paralog Evidence Comments
Glyma02g01520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g01560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g012400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g01560
Coding sequences of Glyma10g01560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g01560.1 sequence type=CDS gene model=Glyma10g01560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGATTGGTGCTTGGAAGAAAAAAGCCAAAGAGTTCTTCACCCCAAGAGAGGTCTTCTACCTCCTCACAATCACAATCCTCAGCCTCCTCCTTCCTTTGTCTTTCTTACTCTTAGCCACTCTTTCTGGTGCCCAATATTATCTTCAAACTCTCACTTTGTTCCAAAGTTACTATTCACCACAACCCTTTCCCTATCTTTTCCACCTTGCCCTCAATATCAACCCATGTATTCTCTACTTTCTCGTGTCCATTGTGAGCATGGGGACCCTGATCCAGGGGCTGACGGGTAAAATCACACTTTTCTCCGAGTTACCGTCCAAGTCCTCGCGTATCTCCACAGCGTGGATTTTACTATGCGCGTTTCAAGTTTGCGTTGGTTTGGGCATAGAGGGGAGCATTGCGGCTGGGCTTTACGACGATGATGTGTCAAGTTTTGGCACCGAGCGTAGCCTGCTGAGCAGGATGATATTTCTGTTGGGCCTGCACGAGACGACCCACGTTTGGTGTAGGATGGTGGTGAGGCCCGTGGTGGATGACACGGTGTTCGGTGGAGCCCGGAGGGAGAGGTGGGTCGAGAGGGTGGGCCTGGCTGCTGGCCTGGGCACGTTGTGGTGGTGGAGACTTAGGGAGGAGGTGGAGACTTTGGTACTTGTGGCCCAAGTCAAGAGTGAGCAATTGATGGATGTGGGGATTGGTGACTTTGTTGGATGGTGGTTGTATTATCTCATTGTGACTATTGGCATGGTGAGGATCGTGAAGGGTCTCATTTGGATTTTCATGATTTCTCTCTGTAGAAGAAGGCCAACAACAACAACAATAGAAGTGGAATCGATTCAGAACGATGACAAGGTGTAA
Predicted protein sequences of Glyma10g01560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g01560.1 sequence type=predicted peptide gene model=Glyma10g01560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMIGAWKKKAKEFFTPREVFYLLTITILSLLLPLSFLLLATLSGAQYYLQTLTLFQSYYSPQPFPYLFHLALNINPCILYFLVSIVSMGTLIQGLTGKITLFSELPSKSSRISTAWILLCAFQVCVGLGIEGSIAAGLYDDDVSSFGTERSLLSRMIFLLGLHETTHVWCRMVVRPVVDDTVFGGARRERWVERVGLAAGLGTLWWWRLREEVETLVLVAQVKSEQLMDVGIGDFVGWWLYYLIVTIGMVRIVKGLIWIFMISLCRRRPTTTTIEVESIQNDDKV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
