Glyma10g01450 - SoyBase

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Report for Sequence Feature Glyma10g01450

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1069805
stop:	1073166
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47260	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 23 \| chr2:19405045-19406446 REVERSE LENGTH=337	SoyBase	E_val: 4.00E-69	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_I1L7N2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7N2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2PJR6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY54 n=1 Tax=Glycine max RepID=Q2PJR6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma10g01450

Locus	Gene Symbol	Protein Name
	WRKY54	WRKY Transcription Factor

Expression Patterns of Glyma10g01450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01450

Paralog	Evidence	Comments
Glyma02g01420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g011300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g01450

Limit To All Plant Sequences

>Glyma10g01450.2   sequence type=transcript   gene model=Glyma10g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCTTCATTTCTATCTTTGCTCCTTGCACACTGTTTTCACTTTCTTTGTAAACCCAAAACTACACACAACCTTTCTCTCTCTTTTACACAAACCTAAGCTATAAACCAGATCAACCTTACCTCTCTCCACTTCTTACTACTGTGAAGTTTGAGTTTGTGGTGTGCAAGATATGAAGGATTTTACCATTTAAAGAGATCAACTTGTTAGGTATATGGAGAAGAAAGAGATGGCTGTGAAAACTGAGGATGCGGTTGGGTCCTCTTCTTTCCCTTGTTATAATTATTCAAACCTTTATCCATTCTCGAACGCGTTTGATTTCTCTGAGGTTGAAAAGAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCTTGAGTTGCCTCAACTTTCAACTGTGTCCGTGCAATCTCATCATCACTCTACAGTTACGGTTCCTTCTGATAACGGGAAAGAGTGTTCTGAGGTGTTGAACCACCAGCCTGCCACTCCAAACTCTTCTTCCATTTCATCCGCGTCCACTGATGCAGTCAATGATGAACAGAAGAAGACTCTAGACCAAGCAGAAGAAGATGATGATGATGATGATGAAGGACAACACAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAATAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAACACACACATCCCAGCCCAGTTATGCCTCGCTCAGTTGTCTCTTCTGGATACGCCAACAACTTTGCTTCAGTTTTGCCACTAGGAAACTACTTATCCCAGTATCAGCAGCAGCACCATCACCACCAACAACAAAAGCTACTTGTCAACACATTGTCCTCTTTGGGTTTTCCTTACAATGATTCTTCATCTCCAAAGAACGCTGTTTTTATTCAAGAGAGACGGCTTTGTAGTAATCAAGGGACGAATGCGTTTCTGAGGGACCATGGACTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAGAGCTGATATAACTCCATAGTTAGTAGTCAACATGCTTCTATGTGGTTTATTTTTTTGCTGACTTTTTCCTATGGGATAATTAGGAATGTGCATTGATTTCACAGATGTACAGCAGTGAAGATTGTTAGGTTAAGGATTTTAAACGGGAAGAATTGGTGTGGAAACTTGCTGCTTTGTTTTGTTCCCGGAAGTCGACCGAAACTAATTATAGAAAAATATTTTTCAAATTAGGATGATATGGTGCTAAAAGTCTTGTCCCAATATGGACACGAGGATATAAATGGGAAGAGTAATTCAACCATTCTGATCCCTCTTTTGAGGTGAATGAGTAAATGCCTCTGTGTATCCTGCACGCGATGCAATCCATTCATGGATTGGATAGTGGTGGAGAAGGGGAGAATTAAAGAAGAACAAATACAAAAGGAGAAATTTTTATACATACAAGCTAAGCATATATCGAGTGTGATATGGTCACTATGATGGAATAGATTTTGATAACGACACATGTTAGTTTTTATTTATGAAGGTATCAAGATAGGTCGTGTTTGTTTACAAGTTTTGTTTTATTGAGCAGTTGAAGGAGGTTCTCACAGTGAAGAATTATTGAAGTTTTTGAGATATTTATATAGCCGTTCACGGATAGGCATAGGCTAACATATTGTGAGATGTTATATACGACACGCCACCGTCAAAGAAATTACTGGGACCAGCTCCCTTTTCTCTCGTATGCTTTCCTTTTCTTTCTCTTTAACGGCAAATGCCACATACATTGCATCGAATTACAATCTTTCACTTCATAAAGTGGGAATAATCTGTAACCCTGTCACTCTTCTTACAAAGCCAAAATTGTCTCTTGATTTGCCTACTTCGATTTTTTCGGCCAATAGACATATAAATGCCAC

Coding sequences of Glyma10g01450

Limit To All Plant Sequences

>Glyma10g01450.1   sequence type=CDS   gene model=Glyma10g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAAGAGATGGCTGTGAAAACTGAGGATGCGGTTGGGTCCTCTTCTTTCCCTTGTTATAATTATTCAAACCTTTATCCATTCTCGAACGCGTTTGATTTCTCTGAGGTTGAAAAGAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCTTGAGTTGCCTCAACTTTCAACTGTGTCCGTGCAATCTCATCATCACTCTACAGTTACGGTTCCTTCTGATAACGGGAAAGAGTGTTCTGAGGTGTTGAACCACCAGCCTGCCACTCCAAACTCTTCTTCCATTTCATCCGCGTCCACTGATGCAGTCAATGATGAACAGAAGAAGACTCTAGACCAAGCAGAAGAAGATGATGATGATGATGATGAAGGACAACACAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAATAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAACACACACATCCCAGCCCAGTTATGCCTCGCTCAGTTGTCTCTTCTGGATACGCCAACAACTTTGCTTCAGTTTTGCCACTAGGAAACTACTTATCCCAGTATCAGCAGCAGCACCATCACCACCAACAACAAAAGCTACTTGTCAACACATTGTCCTCTTTGGGTTTTCCTTACAATGATTCTTCATCTCCAAAGAACGCTGTTTTTATTCAAGAGAGACGGCTTTGTAGTAATCAAGGGACGAATGCGTTTCTGAGGGACCATGGACTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG

>Glyma10g01450.2   sequence type=CDS   gene model=Glyma10g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAAGAGATGGCTGTGAAAACTGAGGATGCGGTTGGGTCCTCTTCTTTCCCTTGTTATAATTATTCAAACCTTTATCCATTCTCGAACGCGTTTGATTTCTCTGAGGTTGAAAAGAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCTTGAGTTGCCTCAACTTTCAACTGTGTCCGTGCAATCTCATCATCACTCTACAGTTACGGTTCCTTCTGATAACGGGAAAGAGTGTTCTGAGGTGTTGAACCACCAGCCTGCCACTCCAAACTCTTCTTCCATTTCATCCGCGTCCACTGATGCAGTCAATGATGAACAGAAGAAGACTCTAGACCAAGCAGAAGAAGATGATGATGATGATGATGAAGGACAACACAAGACTAAGAAACAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAATAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGTGTGGAGAGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAACACACACATCCCAGCCCAGTTATGCCTCGCTCAGTTGTCTCTTCTGGATACGCCAACAACTTTGCTTCAGTTTTGCCACTAGGAAACTACTTATCCCAGTATCAGCAGCAGCACCATCACCACCAACAACAAAAGCTACTTGTCAACACATTGTCCTCTTTGGGTTTTCCTTACAATGATTCTTCATCTCCAAAGAACGCTGTTTTTATTCAAGAGAGACGGCTTTGTAGTAATCAAGGGACGAATGCGTTTCTGAGGGACCATGGACTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG

Predicted protein sequences of Glyma10g01450

Limit To All Plant Sequences

>Glyma10g01450.1   sequence type=predicted peptide   gene model=Glyma10g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKEMAVKTEDAVGSSSFPCYNYSNLYPFSNAFDFSEVEKSSLGFMELLGVQDYSPLLELPQLSTVSVQSHHHSTVTVPSDNGKECSEVLNHQPATPNSSSISSASTDAVNDEQKKTLDQAEEDDDDDDEGQHKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSVVSSGYANNFASVLPLGNYLSQYQQQHHHHQQQKLLVNTLSSLGFPYNDSSSPKNAVFIQERRLCSNQGTNAFLRDHGLLQDVVPSHMLKEE*

>Glyma10g01450.2   sequence type=predicted peptide   gene model=Glyma10g01450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKEMAVKTEDAVGSSSFPCYNYSNLYPFSNAFDFSEVEKSSLGFMELLGVQDYSPLLELPQLSTVSVQSHHHSTVTVPSDNGKECSEVLNHQPATPNSSSISSASTDAVNDEQKKTLDQAEEDDDDDDEGQHKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSVVSSGYANNFASVLPLGNYLSQYQQQHHHHQQQKLLVNTLSSLGFPYNDSSSPKNAVFIQERRLCSNQGTNAFLRDHGLLQDVVPSHMLKEE*

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