Glyma10g01420 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g01420

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1045012
stop:	1047613
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01950	AT	Annotation by Michelle Graham. TAIR10: glycerol-3-phosphate acyltransferase 3 \| chr4:844597-846710 REVERSE LENGTH=520	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
PTHR15486	Panther	ANCIENT UBIQUITOUS PROTEIN	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_B9RNA7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycerol-3-phosphate acyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RNA7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C380	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C380 related cluster n=1 Tax=unknown RepID=UPI000233C380	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01420

Paralog	Evidence	Comments
Glyma02g01400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g011000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01420

Limit To All Plant Sequences

>Glyma10g01420.1   sequence type=CDS   gene model=Glyma10g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAATTGTTCAGAGCGTTTTTCTTCAAGTCTCTTTTCTTCTTTTGGTACCGTTTTCTCTTTAGGCAACTAAGGAACCTAATCCGTTTCCACAGAACCATAAGCAATTCTTTTTCGGGTGCAACACCAACACAGTTTAATAAGTACCAGAAATTCCCCTCTCTAATCCACCGATCAGACCTCAACGATCACATGTTGATCTTTGATGTCGAAAACGCGTTGTTGAAATCCTCTTCTTTGTTCCCATATTTCATGCTCGTGGCCTTTGAGGCAGGGGGGCTTGTTAGAGCCATAGTTTTGGTTCTTCTATACCCTTTTGTTTGTGTCGTAGGAAAAGAGATGGGGTTGAAGATAATGGTCATGGCATGCTTCTTCGGGATCAAAGCATCGAGCTTCAGAGTTGGAAGGTCCGTTTTGCCCAAATTCTTCTTGGAGGACGTTGGTGCAGAAATGTTTGAGGCACTCAAAAAAGGAGGGAAGACAGTGGGAGTTACCAATTTACCCCACGTGATGGTGGAAAGCTTCTTGAGAGAGTATTTGGACATTGATTTCGTTGTGGGAAGGGAGATGAAAGTTTTCTGCGGATACTACGTGGGGTTGATGGAGGACACAAAAACTATGCATGCCTTGGAGCTAGTAAAAGAAGGGAAAGGATGCTCCGACATGATCGGAATCACAAGGTTTCGCAACATTCGCGACCATGATCTATTTTTCTCTCATTGCAAGGAAGTGTACGTGGTGTCAGAAGCAGACAAGAGGAGCTGGCAAAAGCTAGCAAGGGAGAGATACCCCAGAGGCCTTATCTTTCACGATGGAAGATTGGCGCTAAGACCCACTCCAGCGGAGTCCATAGCAATGTTGATGTGGTTCCCCTATGCAATCATCCTCTCTGTTATTCGCATTTCCCTGGCTCTCTCTCTTCCATTTACCATCTCAACCCCCTTGTTGGTCTTTAGTGGGATCCGTCTCACCACAACAACATCAGCACCCACACGCCCCCACAACATTAAACAAAACAACAAGGGCATTGTTGGTAATCTCTACGTGTGTAACCACAGAACATTATTAGACCCGCTCTACATATCTTTCTCATTGCAAAAAAACTTAACCGCCGTCACGTACAGTTTGAGTAGGATGTCTGAGATCCTTGCCCCAATCAAAACGGTGCGGTTAACTAGAAACCGCGACGAGGATGCGAAAATGATGAAAAATTTGCTGGGGCAAGGGGACCTGGTGGTTTGTCCTGAAGGGACCACATGTAGAGAACCTTATTTATTGAGGTTCAGCCCTCTGTTCTCAGAGATGTGCGATGAGATTGTCCCCGTTGCAGTTGATTCCCACGTTAGTATGTTCCACGGAACCACTGCTGGTGGACTTAAGTGCTTGGACCCATTCTTCTTTCTCATGAACCCCGAGCCTGTTTACACGGTTCAGCTGCTCAACCATGTTTTCCCTTCCCAATTACTATCATCTCACACCAGTAACACCAGCGTTCTTGACCATCAAACTTCGAGGTTTCATGTGGCTAATAGGGTCCAAACACAGATTGGTACCGCGTTGGGGTTTGAGTGCACTAAACTCACACGAAAGGACAAGTACTTGATGTTAGCTGGTAATGAAGGCATTGTTAATTCCAACACCAAATGCAAAAGCAAGTCCAAGTCGTAG

Predicted protein sequences of Glyma10g01420

Limit To All Plant Sequences

>Glyma10g01420.1   sequence type=predicted peptide   gene model=Glyma10g01420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKLFRAFFFKSLFFFWYRFLFRQLRNLIRFHRTISNSFSGATPTQFNKYQKFPSLIHRSDLNDHMLIFDVENALLKSSSLFPYFMLVAFEAGGLVRAIVLVLLYPFVCVVGKEMGLKIMVMACFFGIKASSFRVGRSVLPKFFLEDVGAEMFEALKKGGKTVGVTNLPHVMVESFLREYLDIDFVVGREMKVFCGYYVGLMEDTKTMHALELVKEGKGCSDMIGITRFRNIRDHDLFFSHCKEVYVVSEADKRSWQKLARERYPRGLIFHDGRLALRPTPAESIAMLMWFPYAIILSVIRISLALSLPFTISTPLLVFSGIRLTTTTSAPTRPHNIKQNNKGIVGNLYVCNHRTLLDPLYISFSLQKNLTAVTYSLSRMSEILAPIKTVRLTRNRDEDAKMMKNLLGQGDLVVCPEGTTCREPYLLRFSPLFSEMCDEIVPVAVDSHVSMFHGTTAGGLKCLDPFFFLMNPEPVYTVQLLNHVFPSQLLSSHTSNTSVLDHQTSRFHVANRVQTQIGTALGFECTKLTRKDKYLMLAGNEGIVNSNTKCKSKSKS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain