SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g01410

Feature Type:gene_model
Chromosome:Gm10
Start:1035268
stop:1038426
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g01410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62310AT Annotation by Michelle Graham. TAIR10: RNA helicase family protein | chr3:23057516-23060561 REVERSE LENGTH=726 SoyBaseE_val: 0ISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003724GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
KOG0925 KOG mRNA splicing factor ATP-dependent RNA helicase JGI ISS
PTHR18934Panther ATP-DEPENDENT RNA HELICASE JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
PF04408PFAM Helicase associated domain (HA2) JGI ISS
PF07717PFAM Domain of unknown function (DUF1605) JGI ISS
UniRef100_B9RNA6UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RNA6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1JBE2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JBE2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g01410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01410
ParalogEvidenceComments
Glyma02g01390 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g010900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g01410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g01410
>Glyma10g01410.2   sequence type=CDS   gene model=Glyma10g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCCTCAATTTGTTTCGGAAGCTTTGGATATAGAAACCCCTGATAAACGTAGGAAGATGATGATTGCGTGTACTCAGCCTCGTAGAGTGGCTGCGATGTCTGTTTCCAGGCGTGTGGCTGAGGAGATGGATGTCAACATTGGAGAAGAGCTCTTTTATGTCTCTAATGGGATGTATCTCACTGATGGTATGCCTCTGAGAGAGGCAATGACGGATCCGCTTTTGGAACGATACAAAGTAATTATTCTTGACGAAGCACACGAGAGGACTTTGGCTACAGATGTGCTGTTTGGCCTTCTTAAGGAAGTGCTTAGAAATAGACCTGACTTGAAGTTAGTTGTTATGAGTGCAACACTTGAAGCTGAGAATTTCCAGGGATATTTTAGCAGGGCCCCTCTTATGAAGGTTCCTGGAAGACTACATCCGTTGGAGGCTGCTATTAGGACGGTGGTGCAGATTCACATGTGTGAACTCCCTGGAGATATACTCGTTTTTCTCACTGAAGAGGAAGAGATTGAGGATGCATGCCGCAAAATAAACAAAGAAATTTCCAATATGGGAGACCAGGTGGGCCCTGTGAAAGTGCAGAAGATTTTCAAGCCAGCTCCACCTCCAGTTAAGGAGGGAGGGCATCCTGGAAGGAAGATTATGGTATCAACAAAAATAGCAGAAACGTCCTTGACAATTGATAGTATAGTCTATGTTATTGACCCTGGATTTGCTAAGCAGCAGGTTTATAACCCTCGAATCCGTGTTGAGTCTTTGTTGGTGTCTCCAATATCAAAGGCTAGTGCACACCAGAGATCTGGACGTGCTGGAAGAACTCAACCAGGGAAATGTTTTAGACTTTATACTGAAAAAACCTATCCTGAAATTTTGAGATCTAATCTTGCCTACACTGTTCTTACCTTAAAGAAACTTGGTATAGATGATTTAGTGCCTTTTGATTTCATGGACCCTCCTGCCCCAGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGACGATGATGGTAACTTAACAAAGCTGGGTCAGATTATGAGTGAATTTCCACTGGACCCTCAGATGCCAAAGATGCTCGTTGTTAGTCCTGAATTCAACTGTTCAAATGAGATTCTTTCCGTTTCTGCCGTGCTATCTGTACCCAATTGCTTTGTCCGGCCTAGGGCAGCACAAAATGCTGCAGATGAAGCAAAAGCTAGTTTAGGACACATTGATGGGGATCATCTCACGCTCTTGAATGTATACCATGCCTACAAGCAAAATAATGACGATCCTTCTTGGTGTTATGATAACTTTGTTAATCATAGGGCATTGAAATCAGCGGACAGTGTTAGACAACAACTTGTGCGAATCATGGCTCGGTTTAACTTGAAGTTATGCATCACTGATTTCAATAGCCGTGACTACTATGTCAACATTAGAAAGGCAATGCTGGCAGGATATTTCATGCAGGTGGCCCATCTGGAGCGGACAGGACATTTACTTGACAGTGAAAAACAACCAGGTTTGTTAGTGGTGCTCTTGCATCCATCAAATTGCCTGGACCACAAACCGGAGTGGATGTTATTAAGATGTAGTCAACTTTACAGGTTAGTGGATGTAGCCCCACATTACTATGATTTGTCGAATTGTCCACAATGTGAAGCGAAGCGTGTTCTTGAGAGGCTTTACAAGAAGCGAGAAAAGGAAAAGGAGGAAGCCAGGAGTCGTAAATGA
Predicted protein sequences of Glyma10g01410
>Glyma10g01410.2   sequence type=predicted peptide   gene model=Glyma10g01410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IPQFVSEALDIETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVNIGEELFYVSNGMYLTDGMPLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAENFQGYFSRAPLMKVPGRLHPLEAAIRTVVQIHMCELPGDILVFLTEEEEIEDACRKINKEISNMGDQVGPVKVQKIFKPAPPPVKEGGHPGRKIMVSTKIAETSLTIDSIVYVIDPGFAKQQVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKTYPEILRSNLAYTVLTLKKLGIDDLVPFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGQIMSEFPLDPQMPKMLVVSPEFNCSNEILSVSAVLSVPNCFVRPRAAQNAADEAKASLGHIDGDHLTLLNVYHAYKQNNDDPSWCYDNFVNHRALKSADSVRQQLVRIMARFNLKLCITDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHLLDSEKQPGLLVVLLHPSNCLDHKPEWMLLRCSQLYRLVDVAPHYYDLSNCPQCEAKRVLERLYKKREKEKEEARSRK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo