Glyma10g01400 - SoyBase

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Report for Sequence Feature Glyma10g01400

Feature Type:	gene_model
Chromosome:	Gm10
Start:	1026614
stop:	1033301
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47240	AT	Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein \| chr2:19393835-19397616 FORWARD LENGTH=660	SoyBase	E_val: 0	ISS
GO:0001676	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006631	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process	SoyBase	N/A	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0010025	GO-bp	Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010143	GO-bp	Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004467	GO-mf	Annotation by Michelle Graham. GO Molecular Function: long-chain fatty acid-CoA ligase activity	SoyBase	N/A	ISS
GO:0031957	GO-mf	Annotation by Michelle Graham. GO Molecular Function: very long-chain fatty acid-CoA ligase activity	SoyBase	N/A	ISS
KOG1256	KOG	Long-chain acyl-CoA synthetases (AMP-forming)	JGI		ISS
PTHR24096	Panther	FAMILY NOT NAMED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_G7KTN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Annotation was added to scaffolds in November 2011 Long-chain-fatty-acid-CoA ligase n=1 Tax=Medicago truncatula RepID=G7KTN5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C1D7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C1D7 related cluster n=1 Tax=unknown RepID=UPI000233C1D7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01400

Paralog	Evidence	Comments
Glyma02g01370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g010800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01400

Limit To All Plant Sequences

>Glyma10g01400.1   sequence type=CDS   gene model=Glyma10g01400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGCTTTTTCAGTTAAAGTTGAGGAAGGAAGGGAAGGTAAAAATGGTAACCTTTCTGTTGGTCCAGTATACCGTAACCTCCTCTCAGAAAATGAATTTCCTCCAATGGATCCTGATTTCAGTACCACTTGGGATATTTTCTGTGTGTCTGTCAAAAATCATCCCAATAACCGGATGCTGGGAAAGCGTAAAATTGTTGATGGAAAGATTGGACCATATGTCTGGAAGACATATAAAGAAGTCTATGATGAAGTTCTGCATATGAGTTCTGCTTTACGAGCATCTGGTTCCGAACCTGGCACTAAAATTGGAATTTATGGATCTAATTGCCCTGAATGGATTGTGGCAATGGAGGTTTGTTCTGCTCAAAGCTTTATTTGTGTGCCTCTCTATGACACCCTTGGACCTGGTGCTGTAAATTTTATCATAGATCATGCAGAAGTAGATTTTGTGTTCGTCCAAGATAAGAAGGTTAAAGAGCTTTTAAATCCTGAATGTAAATCCTCAAAGCGACTGAAAGCCATGGTGTGCTTCACTACATTAACAGAGGAAGAGAAAGCTAAAGCCACAGCAATTGGAATTAAGCCATATTCGTGGCATGAATTCTTGCACTTGGGAAAAGAAAACCCAAAAAGTACTTTTCCACCTCAAGCTCATGACATTTGCACAATAATGTACACTAGTGGGACAAGTGGAGACCCTAAAGGTGTTGTTTTAACGTATGAAAACGTAACGGCTTTAGTAAGAGGAATGGATCTTTTCATGGAACAATTTGAAGACAAGATGACCGTGGATGATGTGTATTTATCATTCCTACCCTTGGCTCATATCCTTGATCGCACTATTGAGGAGTACTTTTTCCGTAAGGGTGCATCTGTTGGATACTATCATGGGGATCTGAACGCGCTGAGGGATGATTTAATGGAGTTAAAGCCAACACTGTTTGCTGGTGTCCCACGGGTTTTCGAAAAGGTCTATGAAGGTATCAAGAAAGCAGTGGAAGAACTCAATCCAGTGAGGAGAACAGTTTTTGGCATGCTCTACAACTACAAACTTGGTTGGATGAAAAAAGGATATAAACATAGAGAAGCATCACGTTTAGCCGATTTATTAGCCTTCAGAAAGGTCAAAGCTAGGCTTGGTGGTCGTGTTCGACTAATAATATCTGGTGGGGCAGCTTTGAGCCCTGAGGTGGAAGAATTCCTGCGTGTCACTACTTGTGCCTTTGTATGCCAAGGCTATGGTCTGACAGAAACATGTGGACCAACTACTCTTGGCTTTCCTGACGAAATGTGCATGCTTGGTACTGTTGGAGCTGTATCCATATATAATGAAATAAAGCTGGAGGAGGTTCCAGAGATGGGCTACAATCCTCTTGAAACTCCTCCATGTGGTGAGATATGTGTGAGAGGGAAAACTGTTTTCACTGCTTACTACAAAAATCCAGAGTTAACAAAGGAAGCTATTAAAGATGGATGGTTTCACACAGGGGACATAGGAGAAATGCTTCCTAATGGTGTTATTAAGATCATTGACAGGAAGAAGAATCTTGTTAAACTTTCCCAAGGAGAGTATATAGCACTTGAGCATCTTGAAAATGTTTATGGAATCACTCCTATAGTTGAAGATATCTGGGTTTATGGGAATAGCTTCAAGTCAATGCTGGTTGCAGTAGTAGTTCCAAATGAAGAATTTGCCAATAAGTGGGCATATTCGAATGGTCACATAGCTTCTTTCCCCAAACTCTGCTCTCTTGATCAACTGAAGAAATATGTGCTATCTGAGCTCAAGTTGACAGCTGAGAGGAATAAGCTGAGGGGCTTTGAACATATCAAGGGGGTGATATTAGAGCCGCATGAATTTGACATGGAAAGAGATTTGGTGACTGCAACACTGAAGAAGAAAAGAAACAAACTGCTCAAGTATTATCAGGTGGAAATAGATGAAATCTACCAAAGTTTGACAGGGAAAAAAGCATAA

Predicted protein sequences of Glyma10g01400

Limit To All Plant Sequences

>Glyma10g01400.1   sequence type=predicted peptide   gene model=Glyma10g01400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKAFSVKVEEGREGKNGNLSVGPVYRNLLSENEFPPMDPDFSTTWDIFCVSVKNHPNNRMLGKRKIVDGKIGPYVWKTYKEVYDEVLHMSSALRASGSEPGTKIGIYGSNCPEWIVAMEVCSAQSFICVPLYDTLGPGAVNFIIDHAEVDFVFVQDKKVKELLNPECKSSKRLKAMVCFTTLTEEEKAKATAIGIKPYSWHEFLHLGKENPKSTFPPQAHDICTIMYTSGTSGDPKGVVLTYENVTALVRGMDLFMEQFEDKMTVDDVYLSFLPLAHILDRTIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLFAGVPRVFEKVYEGIKKAVEELNPVRRTVFGMLYNYKLGWMKKGYKHREASRLADLLAFRKVKARLGGRVRLIISGGAALSPEVEEFLRVTTCAFVCQGYGLTETCGPTTLGFPDEMCMLGTVGAVSIYNEIKLEEVPEMGYNPLETPPCGEICVRGKTVFTAYYKNPELTKEAIKDGWFHTGDIGEMLPNGVIKIIDRKKNLVKLSQGEYIALEHLENVYGITPIVEDIWVYGNSFKSMLVAVVVPNEEFANKWAYSNGHIASFPKLCSLDQLKKYVLSELKLTAERNKLRGFEHIKGVILEPHEFDMERDLVTATLKKKRNKLLKYYQVEIDEIYQSLTGKKA*

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