Glyma10g01270 - SoyBase

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Report for Sequence Feature Glyma10g01270

Feature Type:	gene_model
Chromosome:	Gm10
Start:	920172
stop:	922988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G62260	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:23038516-23040391 REVERSE LENGTH=384	SoyBase	E_val: 4.00E-175	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF147	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_I1L7L4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7L4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82469	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase-2C n=1 Tax=Mesembryanthemum crystallinum RepID=O82469_MESCR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01270

Paralog	Evidence	Comments
Glyma02g01210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g009800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g01270

Limit To All Plant Sequences

>Glyma10g01270.2   sequence type=transcript   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGTTTAGGTTACTTACTTCGTTGTATGTGCTTAGTTTAGCGGCTTATTTATGATGATCCCACTTGTTTGTTAGCGACAGTAAGGGAATCTCTCTTTGTTCATTTAAATTTGAATTTCTTGAAGGAGATTGATGTGTGTGTGGGATGGATTTTTTTGGTTGTTAGTATCTATAAGGGTAACATTGTTGCTGGTCAACACGTGTTGCAGATCAAATCCTCCTTGGAGATGTTCGTAATTTTGCAATAGATTTTCGAAATTGTGAGTGTGAATTGATTGTTAGCTTGTGGTCTTTTTGTGGTTTGAAGAATCATATTGTTTCTGTGATGAACACGTTATGCAAAATAGTACATCTAGTCCTTGAATATATTGATTCTTGTTTTGCTGATTTGCGTTTAATTATCCTTGTGTAGGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTAGAATCTGCGGTTCTGCAATTTATCCCATGCATCCGTTCTGGTAGTTTTGCTGACATTGGGCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCTCTATACAACTTTCCAAAACCAAGTGCCTTCTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCGGCTTATATAAGAAAACACGTGATAAAATTCTTCTTCGAAGATGTCAGTTTCCCACAGACATCCGAAGTCGATAATGTATTTTTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCATTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGCGTGAATAGTTCATCAGGCACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCTATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGAAGATGGTTATCTGAATGGGGTTTTATCAGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGGCAAGTGGTTCTAACAGATGATGATGAATTCCTCATCATTGGATGCGACGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGGAAAGGCCTGAGGCGGCACGATGACCCAGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGTCTCAACACATTCGACAATCTCACTGTGATCATTGTATGTTTCTCTTCCCTTGACCACGCGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCAAGCAACTGAATGTATGTACATACACAGTTCATCTAATAATGTGTTGTTGGGATTATACACACTGTTTTCGGTTGCTTCAGTTTAGACATTGGAAAAAGCTGCCATCATTTTTTTACGTGGTCGGTTGATGTACGTAGCCTGGGTTGGAGGATGGTGGTGTAAATATGTATTGTCGTTACATTATTATTTTGTACTATAGTCAATTTTTACTATGACTGCCACATTCATGTCAGATTCTTGTGCGTCAATAAATGGAATCTCTTAGCTTCTATTCCATTATCTGTTAGCAATTACATATACTCATTTTAGGACATGTATCTATATACTCCGCATAGGACTCTGGAGCTTAAGTTTCGAGATGGTTTGGCAAATTTTACTTGCTAGGATCCAAATCCAAT

>Glyma10g01270.3   sequence type=transcript   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTATTATTATCACCAATCCCAACAGAAACCGCGAGAAAATTCCCCAGAAATCTCAACACAGGAGAAGAAGAAAAACCAAACACAGTTTATCAATCAAATCTTTTTGGAACATAGCACAACAATTTTCAGCTCTGTACAACGTTGGATTTGGTTCAGTTATCGTGTGAGGAATATTAGAGCATAGAAACATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAACGTGGGTGTGTTGGATGTGAAGCATTTTCCAAATAAGGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTAGAATCTGCGGTTCTGCAATTTATCCCATGCATCCGTTCTGGTAGTTTTGCTGACATTGGGCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCTCTATACAACTTTCCAAAACCAAGTGCCTTCTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCGGCTTATATAAGAAAACACGTGATAAAATTCTTCTTCGAAGATGTCAGTTTCCCACAGACATCCGAAGTCGATAATGTATTTTTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCATTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGCGTGAATAGTTCATCAGGCACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCTATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGAAGATGGTTATCTGAATGGGGTTTTATCAGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGGCAAGTGGTTCTAACAGATGATGATGAATTCCTCATCATTGGATGCGACGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGGAAAGGCCTGAGGCGGCACGATGACCCAGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGTCTCAACACATTCGACAATCTCACTGTGATCATTGTATGTTTCTCTTCCCTTGACCACGCGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCAAGCAACTGAATGTATGTACATACACAGTTCATCTAATAATGTGTTGTTGGGATTATACACACTGTTTTCGGTTGCTTCAGTTTAGACATTGGAAAAAGCTGCCATCATTTTTTTACGTGGTCGGTTGATGTACGTAGCCTGGGTTGGAGGATGGTGGTGTAAATATGTATTGTCGTTACATTATTATTTTGTACTATAGTCAATTTTTACTATGACTGCCACATTCATGTCAGATTCTTGTGCGTCAATAAATGGAATCTCTTAGCTTCTATTCCATTATCTGTTAGCAATTACATATACTCATTTTAGGACATGTATCTATATACTCCGCATAGGACTCTGGAGCTTAAGTTTCGAGATGGTTTGGCAAATTTTACTTGCTAGGATCCAAATCCAAT

Coding sequences of Glyma10g01270

Limit To All Plant Sequences

>Glyma10g01270.1   sequence type=CDS   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAACGTGGGTGTGTTGGATGTGAAGCATTTTCCAAATAAGGTAAGCGATGTTCACGAGATCGGAGACGCAGATGCTAATTCGCCTCCGAGTTTTGACCGAGTTCGTGCCACTGAGTCGGTCTCCGCCGAGTTACTCACTTCACAAGAAGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTAGAATCTGCGGTTCTGCAATTTATCCCATGCATCCGTTCTGGTAGTTTTGCTGACATTGGGCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCTCTATACAACTTTCCAAAACCAAGTGCCTTCTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCGGCTTATATAAGAAAACACGTGATAAAATTCTTCTTCGAAGATGTCAGTTTCCCACAGACATCCGAAGTCGATAATGTATTTTTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCATTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGCGTGAATAGTTCATCAGGCACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCTATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGAAGATGGTTATCTGAATGGGGTTTTATCAGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGGCAAGTGGTTCTAACAGATGATGATGAATTCCTCATCATTGGATGCGACGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGGAAAGGCCTGAGGCGGCACGATGACCCAGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGTCTCAACACATTCGACAATCTCACTGTGATCATTGTATGTTTCTCTTCCCTTGACCACGCGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCAAGCAACTGA

>Glyma10g01270.2   sequence type=CDS   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCTCTATACAACTTTCCAAAACCAAGTGCCTTCTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCGGCTTATATAAGAAAACACGTGATAAAATTCTTCTTCGAAGATGTCAGTTTCCCACAGACATCCGAAGTCGATAATGTATTTTTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCATTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGCGTGAATAGTTCATCAGGCACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCTATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGAAGATGGTTATCTGAATGGGGTTTTATCAGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGGCAAGTGGTTCTAACAGATGATGATGAATTCCTCATCATTGGATGCGACGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGGAAAGGCCTGAGGCGGCACGATGACCCAGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGTCTCAACACATTCGACAATCTCACTGTGATCATTGTATGTTTCTCTTCCCTTGACCACGCGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCAAGCAACTGA

>Glyma10g01270.3   sequence type=CDS   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAACGTGGGTGTGTTGGATGTGAAGCATTTTCCAAATAAGGATGTTAAGTCTGCAGACAGGATCTCAGATGCTGCTCTAGAATCTGCGGTTCTGCAATTTATCCCATGCATCCGTTCTGGTAGTTTTGCTGACATTGGGCCACGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCGTCTCATCTGGGATCTCTATACAACTTTCCAAAACCAAGTGCCTTCTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCGGCTTATATAAGAAAACACGTGATAAAATTCTTCTTCGAAGATGTCAGTTTCCCACAGACATCCGAAGTCGATAATGTATTTTTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCATTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGCGTGAATAGTTCATCAGGCACTACGGCCCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTCTGTCGCAAAGGAGAGGCCATTGACATGTCTGAAGATCACAGGCCTATTTATCTATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTACATAGAAGATGGTTATCTGAATGGGGTTTTATCAGTTACTCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGGCAAGTGGTTCTAACAGATGATGATGAATTCCTCATCATTGGATGCGACGGCATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTCGGAAAGGCCTGAGGCGGCACGATGACCCAGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGTCTCAACACATTCGACAATCTCACTGTGATCATTGTATGTTTCTCTTCCCTTGACCACGCGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCAAGCAACTGA

Predicted protein sequences of Glyma10g01270

Limit To All Plant Sequences

>Glyma10g01270.1   sequence type=predicted peptide   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAEAEVVCQQNVGVLDVKHFPNKVSDVHEIGDADANSPPSFDRVRATESVSAELLTSQEDVKSADRISDAALESAVLQFIPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKHVIKFFFEDVSFPQTSEVDNVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSEDHRPIYLSERRRVEELGGYIEDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQVVLTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHAEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN*

>Glyma10g01270.2   sequence type=predicted peptide   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDEHIRIDDLSSHLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKHVIKFFFEDVSFPQTSEVDNVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSEDHRPIYLSERRRVEELGGYIEDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQVVLTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHAEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN*

>Glyma10g01270.3   sequence type=predicted peptide   gene model=Glyma10g01270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAEAEVVCQQNVGVLDVKHFPNKDVKSADRISDAALESAVLQFIPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKHVIKFFFEDVSFPQTSEVDNVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSEDHRPIYLSERRRVEELGGYIEDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQVVLTDDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHAEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN*

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