Glyma10g01260 - SoyBase

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Report for Sequence Feature Glyma10g01260

Feature Type:	gene_model
Chromosome:	Gm10
Start:	916173
stop:	920129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02475	AT	Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr1:514110-515331 REVERSE LENGTH=219	SoyBase	E_val: 3.00E-38	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03364	PFAM	Polyketide cyclase / dehydrase and lipid transport	JGI		ISS
UniRef100_B6T2Z5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclase/dehydrase n=1 Tax=Zea mays RepID=B6T2Z5_MAIZE	SoyBase	E_val: 2.00E-35	ISS
UniRef100_I1L7L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7L2_SOYBN	SoyBase	E_val: 1.00E-140	ISS

Expression Patterns of Glyma10g01260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01260

Paralog	Evidence	Comments
Glyma02g01200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g009700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g01260

Limit To All Plant Sequences

>Glyma10g01260.4   sequence type=transcript   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCACAGCAACATTAGCACACAAACGTGCGATGCTGATTGAAGCTGTTTGTATGACAACAAAAATCCTCACGAAGAGAGAGAGAGAGAGAGAGGAACTGTGTCTGAATTCTGAAAAAACTGGAACATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGGTAGGTTGCAAGGACATTTTCTTAGTGAATATCATGTTATTGATTAACTTTTTTTTATGGAAATTTTGGTAGTTCAACATCGTGTGAAGATATTTGAGATGTATGACAGCAAAGAAAAGTTCAGATATCACATTTTAGAGCCTGACCTGAAACTTGTGGGCATCTATGTAATTTAAGGGAATAAAAAGACCCTTCAAGCTTTATAGCAGTGAAATTCTCTATTGAGTTATTAGGTTAACGTTTTCCACCTTTCCTTTATTTGTGTACATATGTTATGTTTCTACATTATGATATTAGATAAATCTATACCTGTACACTGGCAGTGAACTCTAGGAATGTGAAATGAAATGCTTCTAGCATGATTAAAGAATTTCTAGTTGTATCTTGTTCAAACTATCTTATTGTGGCTAAAATAGATTTGCTTCATAAACCATGGTTAGCAGTTTAGCACTTGATAGGAACCTAAAGAATTCTGGTTTATTCTGATATTATTCATTTTCAAGAAAAAAGCTTTCATAGAAACTGCCTATGCCAGAGCTAGGGCTGTTCCGAAAGTGTTATTGAACCAAATTGAACCATGAACCAAACCAATCTGTAAGTTAAAAAAAATCAAACTAAATAAACAGTTTGGTTTGGTTCACACAAACTTTTTTCTAGTTCGGTTTGTTTTGAGGAGTACTATTTTCCAGTTCAATTTGGTTTTCTCCCCAGGGGTAATGAACTTTACTTTTAATGAGCTTTTTCCCAGCTCAGCTCAATCCAGTGCACAAGAACAATTCAGTTCAGTAATCCTATAAACCAGTTCAGTTCGAATTTTAGAATACAGTAACAGTGCACCAAACCGAAAAAACAGTTTGGTATTGTTTTTAAATTTGATTCGGTTTTCTGTGCTAAACCATAGCATGAACCGGCCTGGCCAGAGCCTAGCACCTTAGAACAAATATTCTCTACCCCATGTGATGCATAACAAATCCAAGATTTGTGGCTTCCCTCTCCCATGCACCCCGGCCCCCTAATTACCCTTTTGCATCATTGTTTTTTTTTTTTTTGCACAGCAAAAACCCTCTTGCATCATGTGAATCATTCCTCAAAATGCTAACCATTTGCACCCAAGCTAACTAACTCAACCCAGAACCACACTTATTCCTTCTAGAACAAGCTTTCCATATTGTGGGCCTTTTTGTTACTGATCCATTATCACATCCATTTTTGCTTTCACACTTGAACCACAGCTTTCATCAGCACTTGTCTTAGTCTAATGTGTCACTAAAACAAAATTAAATGTTATGGCTACTAAAGAGACTGTTGCATGGATACATTATCCAGTATTTTTAAGACTTTTAATTGCTTGATTTCTCATGTGGCAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCATCATGTGTAGTAGAACTGACAGTCTCATATGAGGTTCCTCAACTTTTAGCTCCAGTGGCATCGGCACTGCAGCCTTTCCTTGAAGGTTTACTTCAACGTGGTTTGGAAAGATTTGCTAAATTCGCCAAAAGCTACATCTAAATGTTTATTATGATTGTCCTGATTTTTATAGCAGGGCTACATTTCTAAAAGTGAACATTCCTGATTATTTTCATGGCGATCTCATTCTGTCTGAACATTGATTGAATTACTGTTATCATGCCAATTTTTGGTTGCATGAATGGTTATCCCATTTTGAAGTGTTAATTAATTATGTATAACTCTGATAGACGGTCTTAATGCAAAATGAACACATCCGACATAATGTTAAAGGTCTGTTCTTAAATCCG

>Glyma10g01260.5   sequence type=transcript   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCACAGCAACATTAGCACACAAACGTGCGATGCTGATTGAAGCTGTTTGTATGACAACAAAAATCCTCACGAAGAGAGAGAGAGAGAGAGAGGAACTGTGTCTGAATTCTGAAAAAACTGGAACATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCATCATGTGTAGTAGAAGTAAGGTCCATTATACAATTTTTTGCATGTTTTACCTATATCATATTCATATTTCTAAGCTTTTGATCTTTCTTGGACAACTTTTATCTACCAATGTTGCTTATATGGGTATTTGCAGAGTTTCATACTTTGATACCATGCTTCAAATTTTTGAAAAAATTTGGGCTCATCTATATTGATTGTAATTCTCACAAAAAGCTGACAGTCTCATATGAGGTTCCTCAACTTTTAGCTCCAGTGGCATCGGCACTGCAGCCTTTCCTTGAAGGTTTACTTCAACGTGGTTTGGAAAGATTTGCTAAATTCGCCAAAAGCTACATCTAAATGTTTATTATGATTGTCCTGATTTTTATAGCAGGGCTACATTTCTAAAAGTGAACATTCCTGATTATTTTCATGGCGATCTCATTCTGTCTGAACATTGATTGAATTACTGTTATCATGCCAATTTTTGGTTGCATGAATGGTTATCCCATTTTGAAGTGTTAATTAATTATGTATAACTCTGATAGACGGTCTTAATGCAAAATGAACACATCCGACATAATGTTAAAGGTCTGTTCTTAAATCCG

>Glyma10g01260.6   sequence type=transcript   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCACAGCAACATTAGCACACAAACGTGCGATGCTGATTGAAGCTGTTTGTATGACAACAAAAATCCTCACGAAGAGAGAGAGAGAGAGAGAGGAACTGTGTCTGAATTCTGAAAAAACTGGAACATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCATCATGTGTAGTAGAACTGACAGTCTCATATGAGGTTCCTCAACTTTTAGCTCCAGTGGCATCGGCACTGCAGCCTTTCCTTGAAGGTTTACTTCAACGTGGTTTGGAAAGATTTGCTAAATTCGCCAAAAGCTACATCTAAATGTTTATTATGATTGTCCTGATTTTTATAGCAGGGCTACATTTCTAAAAGTGAACATTCCTGATTATTTTCATGGCGATCTCATTCTGTCTGAACATTGATTGAATTACTGTTATCATGCCAATTTTTGGTTGCATGAATGGTTATCCCATTTTGAAGTGTTAATTAATTATGTATAACTCTGATAGACGGTCTTAATGCAAAATGAACACATCCGACATAATGTTAAAGGTCTGTTCTTAAATCCG

Coding sequences of Glyma10g01260

Limit To All Plant Sequences

>Glyma10g01260.3   sequence type=CDS   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGGTAGGTTGCAAGGACATTTTCTTAGTGAATATCATGTTATTGATTAA

>Glyma10g01260.4   sequence type=CDS   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGGTAGGTTGCAAGGACATTTTCTTAGTGAATATCATGTTATTGATTAA

>Glyma10g01260.5   sequence type=CDS   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCATCATGTGTAG

>Glyma10g01260.6   sequence type=CDS   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAACTACTGTGGTAGGCTCTATTTCTACAACAGCAGCTTTGACACCCTTGTTGCCATCATCACGTACAAGTAGAAGCACATTTGGCGCCAATTCCACCTCCACAAGCTTCCCCGCTACTCCACTCTCCTCCAATCTCCTCTTCTTCAAGCTCAATCACACTTCTTCTTCTTCTTCCAAACGAACCTCAACCTTCCATGGCTTCAAGCGCTTTTCACCCGTCATGGAGTGGCAGGATTGCACGGTTAAGATGGAGATTGATGTGCCCATCTCTGTAGCCTACACTTGTTATTCTGATCGCGAAGCCATCCCAAACTGGATGCCCTTTATTTCTTCTGTTAAGATATTGCCAGACAAACCTGACCTGTCACGGTGGTCCTTGAAGTATAAAGCATTTGGTCGTGATATTGAATTCTCTTGGCTTGCTCGTAATATGCAGGAAAAGATCCCCAACCTAATACTATACTTGTTTTTCTCAATAAATTCTCTTTACTTACAATTGTTATTTGTTATTCATGTTATATCACCTTCTTGCAGCCCATTCCAAATCAGAAAATTCACTGGCGATCTATGGAAGGTCTTCCAAACAGAGGTGCTGTGCGATTCTATCCAAAAGGTCCTTCATCATGTGTAG

Predicted protein sequences of Glyma10g01260

Limit To All Plant Sequences

>Glyma10g01260.3   sequence type=predicted peptide   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTTVVGSISTTAALTPLLPSSRTSRSTFGANSTSTSFPATPLSSNLLFFKLNHTSSSSSKRTSTFHGFKRFSPVMEWQDCTVKMEIDVPISVAYTCYSDREAIPNWMPFISSVKILPDKPDLSRWSLKYKAFGRDIEFSWLARNMQEKIPNLILYLFFSINSLYLQLLFVIHVISPSCSPFQIRKFTGDLWKVFQTGRLQGHFLSEYHVID*

>Glyma10g01260.4   sequence type=predicted peptide   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTTVVGSISTTAALTPLLPSSRTSRSTFGANSTSTSFPATPLSSNLLFFKLNHTSSSSSKRTSTFHGFKRFSPVMEWQDCTVKMEIDVPISVAYTCYSDREAIPNWMPFISSVKILPDKPDLSRWSLKYKAFGRDIEFSWLARNMQEKIPNLILYLFFSINSLYLQLLFVIHVISPSCSPFQIRKFTGDLWKVFQTGRLQGHFLSEYHVID*

>Glyma10g01260.5   sequence type=predicted peptide   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTTVVGSISTTAALTPLLPSSRTSRSTFGANSTSTSFPATPLSSNLLFFKLNHTSSSSSKRTSTFHGFKRFSPVMEWQDCTVKMEIDVPISVAYTCYSDREAIPNWMPFISSVKILPDKPDLSRWSLKYKAFGRDIEFSWLARNMQEKIPNLILYLFFSINSLYLQLLFVIHVISPSCSPFQIRKFTGDLWKVFQTEVLCDSIQKVLHHV*

>Glyma10g01260.6   sequence type=predicted peptide   gene model=Glyma10g01260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSTTVVGSISTTAALTPLLPSSRTSRSTFGANSTSTSFPATPLSSNLLFFKLNHTSSSSSKRTSTFHGFKRFSPVMEWQDCTVKMEIDVPISVAYTCYSDREAIPNWMPFISSVKILPDKPDLSRWSLKYKAFGRDIEFSWLARNMQEKIPNLILYLFFSINSLYLQLLFVIHVISPSCSPFQIRKFTGDLWKVFQTEVLCDSIQKVLHHV*

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