Glyma10g01241 - SoyBase

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Report for Sequence Feature Glyma10g01241

Feature Type:	gene_model
Chromosome:	Gm10
Start:	906726
stop:	913111
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01241

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47115	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr2:19345376-19346864 REVERSE LENGTH=300	SoyBase	E_val: 2.00E-99	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q8H101	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G10660 protein n=1 Tax=Arabidopsis thaliana RepID=Q8H101_ARATH	SoyBase	E_val: 2.00E-70	ISS
UniRef100_UPI000233C379	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C379 related cluster n=1 Tax=unknown RepID=UPI000233C379	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01241

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g01241 not represented in the dataset	Glyma10g01241 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g01241 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g009500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01241

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g01241

Limit To All Plant Sequences

>Glyma10g01241.2   sequence type=transcript   gene model=Glyma10g01241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGAGATTATCAAATTGTGATTGAAATTGTATATAAGTGATAAATTGAATATATGATGAATTGTAAAATAATATATTACTTTGAGATTGTAATATTGTTATGAAGATTAAGTATAAGTGCAAAGTTGAATGTATTAAATTGCGAGATACACGTAAACATGAGATGGTTGATTGTGACGTAATGAGATGTGAAGTTGTGAACATGAAGTGTGTGGTTAACACTTGATGTGACATTACTTGTTCTGTGAGCTGTGAATTATACAATAATTCGACCAGTGTTTATCTTGAGAAAAATGTTGATGCGCAGTGTTAAAGGGAAAATGTAGGTTTCCTAGTTATGAATCATTGTTAAATTGTAGCGCAATGTGTTAAAAGTGTTTGAAACACGAGTGTGAGGTCGTGATTATTGTATAATTCATGAGGAGTGTCTGCTTATAATATTATTGTTGAAATCGAGTATAAGTACAAAGTTGAACATGTGTTAATTTGTGAGATACATGTAAATCTGTGATGGTGGATTGTGGCATTATGAGATGTTAAATTGTGGGCATGATATTTGGTTGTGAATAAGTGTGTGTATTTAACACGTGATGTGACAATAATTATGTTGTGAGCTGTGAATTATACAATAACCCGACCAGTGTTTATATTGAGAAAAGTGTTTATGCATAGTGTTAAAGAGAAAGTGTAAGTTCCTAGTTAGGAACCAGTGTTAAATTGTAGTGCAATGTGTTAAACGTGTTTGAAACACGAGTGTGAGGTCATGGATATTATATAATTCATGAGTAGTGTCTGCTTGCAAAAATTATTTTAGGGGTTGGACCTGAATCAGGAAGGTGAGGCCTTAACGGATTCTTCGGAGTCTAGGCCTTGGGGGTAAAGACACTCGGTTTGAGTGCTCCTTTAAGCCTACGTTGATCCCATATGATTGGAGCATTCTTGCAAAACGGAGTGACCATGACTGGTCACCTTATGATTTTACTTAGTGAGAATGACCTGACATACCCATTGTGTGGTGTGTCTTGTTATGTACTCTTAAGCGTCTCAGGGTATTTTTCACTGACATGGTACCACATTGCATGTAGGCTTGAGTCTTAGTATAATTGTTGCATAACGCTTGCTAATTGTTTATTATGAAATTGATGAGTGTTATTGCGTCTTGACTCGAGTGTGTGATTCATGTGTAATGTGATTAGTGATTGAAAAAAAATGAATTTTAAAGATAAAGTGGTGAAGTGACGTGGGTTGTATTAAGTTATGTTATAAATATTTCCATAATTTATTTTGATTACGTCTTGATTATTTGTTTGTTATTTTTTTTGTGTGATAACTCACTCCTTGTGTGTTATTTGTGTTTGGATCTTGTGATGATCTCGAACCTTGTGTTCGTGGGAGCAAATGACTAGGTGAATGACTTTAAAGAACCTCGTGCCAGAGGACGTTGGAACACAATACTCTGATAGGATGTAACATTGAGAATAAATTTTTATTTTAATTGCATGACTTTAAAGAACCTTGTGCCAGAGGATGTTATTTTATTTTATTTTATCTCACTGATTTAACAAAATATTTTTTTTTTTGTAAACTTGACGGCCTTGTTTTGAGCCGAATATGTTTTTAATAAGTCTTATTTGATAATAGTGAAGTGAATGTGAACCTTTTACCTAGTAAATTTGTTGATCAATACTTTTATTTGTTTTATTTATTTATATGTATGTCGGGTAGAGGGTATCACAAAAGTCAACATCAATTCAAAAGTTTTACCTTTATACTTTAAAATCAACTTGATGATGAGTAACATTTAAGCAAACTCAATACTTGCAAATAAAATCCCTTGTTTTACTTTTAGAAGGAAAAAACTTGCTGATGTTTTGAATCATAGGGAAGTATAGCAAACAGTTATATCATAAAGTCAACTGTTCTTGCCGTTGTTCTGTCTTTCAGTTATGTGTTTCAGCTGGCCCTGCCCTTGGCCTCTGGCCCCAAGATATCTTCAAACTTCAAAGTTTCTCTTGTTTTGTCTTCTTGAATTCCACCTTCATCAACCTAGAGCCCCTTAAAACTTAAAAGTGTCCTAATTTAGTTAATTGATCCCATACCATAGTCTATTCCATTAATGTCAGGTGGTGAAGACACTGAGGGCTACAAGTACTGGTTTCGATGGCAAGTGCCTGTGTGTGCTTTGATCCTTATTGTCTCCATCATAACAGCTTCCATGCAAATTGTAAAGGCCAAAGCACAGCCCTTTTACCACAATCACTTGTGGCTTCCCTGTTGGAGAAAACTCAGTCCTGTGTGGCTTTTCTTCTCTAGAGCTTTCGCGTTCCTTTGCTTGGCTCACCTTCATTTTGATATCATTGCCTTGGATGGAGCCTTTTCTTTCTATTTTTATACTCAGTGGACTTTCACATTAGTTATGATATATTTTGCATTGGGGACAATAATATCTGCACACGGATGTTGGCAGTACATAAACAAACCTCCGCTTCAAAATGGGGAAATGGCTGAGTTTCTGAGAAGGGATTTGGAAGAGAGTACAAACTCTATTGCCTATAGAGAGAAAGAAACAAAAAGTTCCATCAGGTTGCAAAGCCAATATATCCAAGAGGAGTTTAACCAAAGAGTAGGATTCTGGGGTTACCTCATGCAAATTACTTATCAGACAAGCGCAGGGGCTATCATCCTAACAGACATTGTGTTTTGGTGTGTTATTGTCCCATTCTTATCAATTTCTCATTTCAAGCTAAACATGTTGATGGTTTCCATGCATAGCCTGAACGCTGTTTTCCTTCTTCTGGATACAGCGTTGAATAATCTTCCCTTTCCTTGGTTTAGACTCTCGTATTTTGTGCTGTGGAGCTGTGGCTACATAATTTTCCAATGGGTCATCCACGCCTTTGGTTTTACATGGTGGCCATACCCATTTCTTGAGCTTAATACCCCATGGGCTCCAGTTTGGTATCTGTGCTTGGCAGTAATTCACATACCCTTGTATGGCATGTATTCATTAATAGTGAAAGCAAAAAATACGATTCTTCCCAGATTCTTCCCTCGTGCATTTTTGAGGACATACTAGTTTGGTTGCCATAGGAAATTACAGAAAACTAGGAGTGACTTGTTCACGTGTCTTGACAAACAAAATTGGGTTTACACAGGTTCCCTACAGGCTACAAGGGTTCTTGCAAATGGTTCAAATTAATTATACTAGTAGTATTGGAAAATTTTCAATGATTTGTATATTATAAGAAATTCCATATCAGATCATGCAAGTTTAACAATGAAAAGAAGAGGCGCCCTGAGCATGATGTTCATTTTC

Coding sequences of Glyma10g01241

Limit To All Plant Sequences

>Glyma10g01241.1   sequence type=CDS   gene model=Glyma10g01241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACGGCATTGGAATTAGAGTGGTACGATTTTGTGTGTTTTGGCATTGTTGGTTTGGCCTTCCTGGGTGCCATATGGGTGCTTTGGATGCACGAAGGGGCCTCCCAAAGCAAATTGGGAACCTTGGAAGAGAACCTTCTGGTGGGTCTACAAGACAGTACTGGAGTGGTCGTGAATGTGGTTCTGAGAGACAGAGTCATAGGTCAGGTGAGGAGCACCCCCCAGTTATGGACCAGTTGTTGGCGAGGACTGCACCCTTTGTTCCTCTTGATCACGCGTTTCCTTTCCTTTGTGGTCATGGCCGTTTTGCTACCATTGGATGTTCGTGAGTACGATGCAAGTATCTTTGTTTACTATACAGAGTGGACTTTCACATTAGTTATGATATATTTTGCATTGGGGACAATAATATCTGCACACGGATGTTGGCAGTACATAAACAAACCTCCGCTTCAAAATGGGGAAATGGCTGAGTTTCTGAGAAGGGATTTGGAAGAGAGTACAAACTCTATTGCCTATAGAGAGAAAGAAACAAAAAGTTCCATCAGGTTGCAAAGCCAATATATCCAAGAGGAGTTTAACCAAAGAGTAGGATTCTGGGGTTACCTCATGCAAATTACTTATCAGACAAGCGCAGGGGCTATCATCCTAACAGACATTGTGTTTTGGTGTGTTATTGTCCCATTCTTATCAATTTCTCATTTCAAGCTAAACATGTTGATGGTTTCCATGCATAGCCTGAACGCTGTTTTCCTTCTTCTGGATACAGCGTTGAATAATCTTCCCTTTCCTTGGTTTAGACTCTCGTATTTTGTGCTGTGGAGCTGTGGCTACATAATTTTCCAATGGGTCATCCACGCCTTTGGTTTTACATGGTGGCCATACCCATTTCTTGAGCTTAATACCCCATGGGCTCCAGTTTGGTATCTGTGCTTGGCAGTAATTCACATACCCTTGTATGGCATGTATTCATTAATAGTGAAAGCAAAAAATACGATTCTTCCCAGATTCTTCCCTCGTGCATTTTTGAGGACATACTAG

>Glyma10g01241.2   sequence type=CDS   gene model=Glyma10g01241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGGTGAAGACACTGAGGGCTACAAGTACTGGTTTCGATGGCAAGTGCCTGTGTGTGCTTTGATCCTTATTGTCTCCATCATAACAGCTTCCATGCAAATTGTAAAGGCCAAAGCACAGCCCTTTTACCACAATCACTTGTGGCTTCCCTGTTGGAGAAAACTCAGTCCTGTGTGGCTTTTCTTCTCTAGAGCTTTCGCGTTCCTTTGCTTGGCTCACCTTCATTTTGATATCATTGCCTTGGATGGAGCCTTTTCTTTCTATTTTTATACTCAGTGGACTTTCACATTAGTTATGATATATTTTGCATTGGGGACAATAATATCTGCACACGGATGTTGGCAGTACATAAACAAACCTCCGCTTCAAAATGGGGAAATGGCTGAGTTTCTGAGAAGGGATTTGGAAGAGAGTACAAACTCTATTGCCTATAGAGAGAAAGAAACAAAAAGTTCCATCAGGTTGCAAAGCCAATATATCCAAGAGGAGTTTAACCAAAGAGTAGGATTCTGGGGTTACCTCATGCAAATTACTTATCAGACAAGCGCAGGGGCTATCATCCTAACAGACATTGTGTTTTGGTGTGTTATTGTCCCATTCTTATCAATTTCTCATTTCAAGCTAAACATGTTGATGGTTTCCATGCATAGCCTGAACGCTGTTTTCCTTCTTCTGGATACAGCGTTGAATAATCTTCCCTTTCCTTGGTTTAGACTCTCGTATTTTGTGCTGTGGAGCTGTGGCTACATAATTTTCCAATGGGTCATCCACGCCTTTGGTTTTACATGGTGGCCATACCCATTTCTTGAGCTTAATACCCCATGGGCTCCAGTTTGGTATCTGTGCTTGGCAGTAATTCACATACCCTTGTATGGCATGTATTCATTAATAGTGAAAGCAAAAAATACGATTCTTCCCAGATTCTTCCCTCGTGCATTTTTGAGGACATACTAG

Predicted protein sequences of Glyma10g01241

Limit To All Plant Sequences

>Glyma10g01241.1   sequence type=predicted peptide   gene model=Glyma10g01241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTALELEWYDFVCFGIVGLAFLGAIWVLWMHEGASQSKLGTLEENLLVGLQDSTGVVVNVVLRDRVIGQVRSTPQLWTSCWRGLHPLFLLITRFLSFVVMAVLLPLDVREYDASIFVYYTEWTFTLVMIYFALGTIISAHGCWQYINKPPLQNGEMAEFLRRDLEESTNSIAYREKETKSSIRLQSQYIQEEFNQRVGFWGYLMQITYQTSAGAIILTDIVFWCVIVPFLSISHFKLNMLMVSMHSLNAVFLLLDTALNNLPFPWFRLSYFVLWSCGYIIFQWVIHAFGFTWWPYPFLELNTPWAPVWYLCLAVIHIPLYGMYSLIVKAKNTILPRFFPRAFLRTY*

>Glyma10g01241.2   sequence type=predicted peptide   gene model=Glyma10g01241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGGEDTEGYKYWFRWQVPVCALILIVSIITASMQIVKAKAQPFYHNHLWLPCWRKLSPVWLFFSRAFAFLCLAHLHFDIIALDGAFSFYFYTQWTFTLVMIYFALGTIISAHGCWQYINKPPLQNGEMAEFLRRDLEESTNSIAYREKETKSSIRLQSQYIQEEFNQRVGFWGYLMQITYQTSAGAIILTDIVFWCVIVPFLSISHFKLNMLMVSMHSLNAVFLLLDTALNNLPFPWFRLSYFVLWSCGYIIFQWVIHAFGFTWWPYPFLELNTPWAPVWYLCLAVIHIPLYGMYSLIVKAKNTILPRFFPRAFLRTY*

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