Glyma10g01180 - SoyBase

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Report for Sequence Feature Glyma10g01180

Feature Type:	gene_model
Chromosome:	Gm10
Start:	878255
stop:	880592
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05610	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily \| chr3:1625876-1627976 REVERSE LENGTH=669	SoyBase	E_val: 5.00E-142	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_I1L7K4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1L7K4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C378	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C378 related cluster n=1 Tax=unknown RepID=UPI000233C378	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01180

Paralog	Evidence	Comments
Glyma02g01140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g009000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g01180

Limit To All Plant Sequences

>Glyma10g01180.1   sequence type=CDS   gene model=Glyma10g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATGGAAAAATACTTGCATCTGGTGTTTCCCTAATCCTTGTGGTGGGTGTTGCCATCGGTGTTGTGGTTGTTGTTAACAGAAAGGGCACATCCAATCCTGAAGTAGAAGCTCAACAGAAATCCGTGAAGGCAATGTGTGAAGGCACCGATGACCCTAAGCTTTGTCACGATACTCTTATTACCGTGAACAGCACGAATTCCTCAGATCCAAAGGCATACATAGCTGCTGGAGTGGAAGCAACGGTGAAAAGCGTGATCCAAGCATTGAACATGAGTGATAGGCTCAAAGTGGAACATGGAGACAAAGATCCTGGCATCAAAATGGCCCTTGATGATTGCAAGGACTTAATCGAATTCGCCTTGGACAGCATCGAGTCCTCGGCTAATTTGGTTAACAATCACAACATTCAAGCGCTGCATGACCAATCTCCTGACTTCAGGAACTGGTTGAGTGCAATTATCTCGTACCAGCAATCATGCATGGACGGCTTCAACAACGAGACCAACGGTGAGCAGGAAATTAAGGAACAACTGCACACAGGAAGTTTGGACCAAATGGGGAAGCTCACTGGCATAGTCCTAGACATTGTCACCAACTTATCCAAAATCCTTCAGAGTTTTGACCTCAAGTTGGATTTGAACCCGGCTTCTCGTCGTCTTCTCGAGCTTGATGCTGAAGGGTACCCTACGTGGTTCTCTGCTGCAGATCGCAGGCTACTTGCTAAGATGAACCAAGGAGGTGCACCCCCACCCAATGCAGTGGTTGCCCTAGATGGTAGTGGTCAATTTAAATCCGTTAAGCAAGCTATTGACTCCTACCCTAAGAATTTCAAAGGCAGATTCATTATTTATGTTAAAGCTGGGATTTATAACGAGTATATCACTATCCCTAAGAAGTCAGAGAATATTTTGATTTATGGTGATGGCCCTACAAAATCCATTATTACTGGTAACAAAAACTTTATAGATGGCGTCAAGACAATGCAAACTGCCACCTTTGCCAATACTGCACCTGGATTCATTGCCAAGTCAATAGCATTCGAGAACACAGCGGGTGCAAAGAAGCACCAAGCAGTGGCATTCAGAAACCAAGGAGACATGTCGGCCATGTTCGACTGTGCCATGCACGGTTACCAAGACACATTGTACACCCAAGCCAACCGTCAATTCTACCGCAACTGCGAAATCTCGGGCACCATAGACTTCATCTTCGGAGCAGCTCCAACTCTGATCCAGAACTCGAGAATCATAGTAAGGAAGCCAGAAGCTAACCAATTCAACACGGTGACCGCAGATGGAACCAAGCAGAAGAACATGGCCACAGGAATCGTGCTCCAGAACTGCGAGATACTGCCGGAGCAAGCTCTGTTCCCTACAAGGTTCCAAACGAAATCCTACTTGGGGAGGCCGTGGAAGGACTTCGCAAGAACAGTGGTTATGGAATCCAACATTGGCGACTTTATTCAGCCAGAGGGGTGGACCCCTTGGAGTGGGAACTTGTTTCTTGACACGTTGTACTATGCTGAGTATGCTAACGTTGGACCTGGTTCCAACGTTCAAGGAAGGGTTAAGTGGAAGGGTTACCATCCCAATATTAATAAGAACGAAGCTGAGCAATTCACTGCTGGCCAATTCCTCAGAGGTGGACCTTCTGGAAATGCCGATGATTGGTTGAAGGCTACTGGCGTTCCTTATACCATTGGTTTCACCAAACCTTGA

Predicted protein sequences of Glyma10g01180

Limit To All Plant Sequences

>Glyma10g01180.1   sequence type=predicted peptide   gene model=Glyma10g01180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNGKILASGVSLILVVGVAIGVVVVVNRKGTSNPEVEAQQKSVKAMCEGTDDPKLCHDTLITVNSTNSSDPKAYIAAGVEATVKSVIQALNMSDRLKVEHGDKDPGIKMALDDCKDLIEFALDSIESSANLVNNHNIQALHDQSPDFRNWLSAIISYQQSCMDGFNNETNGEQEIKEQLHTGSLDQMGKLTGIVLDIVTNLSKILQSFDLKLDLNPASRRLLELDAEGYPTWFSAADRRLLAKMNQGGAPPPNAVVALDGSGQFKSVKQAIDSYPKNFKGRFIIYVKAGIYNEYITIPKKSENILIYGDGPTKSIITGNKNFIDGVKTMQTATFANTAPGFIAKSIAFENTAGAKKHQAVAFRNQGDMSAMFDCAMHGYQDTLYTQANRQFYRNCEISGTIDFIFGAAPTLIQNSRIIVRKPEANQFNTVTADGTKQKNMATGIVLQNCEILPEQALFPTRFQTKSYLGRPWKDFARTVVMESNIGDFIQPEGWTPWSGNLFLDTLYYAEYANVGPGSNVQGRVKWKGYHPNINKNEAEQFTAGQFLRGGPSGNADDWLKATGVPYTIGFTKP*

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