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Report for Sequence Feature Glyma10g01131

Feature Type:gene_model
Chromosome:Gm10
Start:799549
stop:807845
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g01131
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14455AT Annotation by Michelle Graham. TAIR10: Target SNARE coiled-coil domain protein | chr4:8310482-8311938 FORWARD LENGTH=130 SoyBaseE_val: 3.00E-61ISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005484GO-mf Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG3385 KOG V-SNARE JGI ISS
PTHR12791Panther GOLGI SNARE BET1-RELATED JGI ISS
PTHR12791:SF5Panther BET1-LIKE SNARE 1 JGI ISS
PF05739PFAM SNARE domain JGI ISS
UniRef100_Q94CG2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like SNARE 1-2 n=2 Tax=Arabidopsis thaliana RepID=BET12_ARATH SoyBaseE_val: 1.00E-58ISS
UniRef100_UPI000233C373UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C373 related cluster n=1 Tax=unknown RepID=UPI000233C373 SoyBaseE_val: 2.00E-84ISS

Expression Patterns of Glyma10g01131
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g01131 not represented in the dataset
Glyma10g01131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01131
ParalogEvidenceComments
Glyma20g21860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01131 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g008300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g01131
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g01131
>Glyma10g01131.1   sequence type=CDS   gene model=Glyma10g01131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTACCGAAGAGATAATCGCTCCTCCAGATCATCACTTGTAGATGGTTTTGATAGTCTGGAGGAGGGTGGTCTAAGGGCTTCTTCTTCTTACTCACGCGAAATTAATGAGCATGATAATGATAAAGCCATAGAGAATTTGCAGGACAGAGTTTCCTTTCTGAAACGGTTAACAGGTGATATACATGAGGAGGTTGAGAGTCATAACCAGTTGCTTGATCGGGTGGGTAACAAAATGGACGGATCAAGGGGTGTGATGATGGGAACCATGGATCGATTTAAAAAGGTTTTTGAGAAGAAATCAGCAAGGAAAACATGCTCACTTGTGGGGTATTTCACACTTGCCTTCATATTCATATACTATCTTATTAGGATGCTTGGATACTTTACACTTGGGTAA
Predicted protein sequences of Glyma10g01131
>Glyma10g01131.1   sequence type=predicted peptide   gene model=Glyma10g01131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYRRDNRSSRSSLVDGFDSLEEGGLRASSSYSREINEHDNDKAIENLQDRVSFLKRLTGDIHEEVESHNQLLDRVGNKMDGSRGVMMGTMDRFKKVFEKKSARKTCSLVGYFTLAFIFIYYLIRMLGYFTLG*






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