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Report for Sequence Feature Glyma10g01091

Feature Type:gene_model
Chromosome:Gm10
Start:760618
stop:767818
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g01091
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43530AT Annotation by Michelle Graham. TAIR10: Helicase protein with RING/U-box domain | chr5:17489327-17494830 FORWARD LENGTH=1277 SoyBaseE_val: 5.00E-146ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016818GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides SoyBaseN/AISS
KOG4172 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR10799Panther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED JGI ISS
PTHR10799:SF164Panther SNF2 DOMAIN-CONTAINING PROTEIN JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
PF00176PFAM SNF2 family N-terminal domain JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
UniRef100_B9STJ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9STJ2_RICCO SoyBaseE_val: 7.00E-145ISS
UniRef100_I1L7J4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1L7J4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g01091
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g01091 not represented in the dataset
Glyma10g01091 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01091
ParalogEvidenceComments
Glyma20g21940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01091 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g008000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g01091
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g01091
>Glyma10g01091.1   sequence type=CDS   gene model=Glyma10g01091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGCTTGGAAGACCTATACAGTCTCTTGCGTTTCTTGCGTGTTGAACCTTGGTGCAACTTGACATTGTGGCAGAAGTTAATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGGAGTTGGCCAAGGTCATTTTGAGGATGCTGATGTTAAGAAGAACAAAGGAAACGAAGGATAAGAGAGGTAGTGTGAACAATCAGAATCTGAACGGGACTTTTATGAAGCCCTTTTCGAGAGATCTGAAGCAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTCACCATTATGCAAATATCCTTGACCTACTAATGCAGTTGAGGCGGTGTTGTAACCATCCATTTTTAGTTATGTGCGGAAGTGATACCCAGAAACGTGCAGATTTAAGCAGACACGCAAGAAGATTCCTTCAGACTAATACTGAATGCCCCGAAGAAAGCAATCAAAATGATCCTCGGCAGCAAGCAGAGTTGAACAAACTTGCAAAATGTTCTATATGCATGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCACATAAATTTTGTAGAGAATGTCTATATAGTTGCTGGGGCACCTCAGCGGGTGGTAAATGTCCAATCCGTCGTCAATTGCTCCAGAAAGACGATCTGATTACTTATTCATCTGAAAGTCCATTCAAGCTCGATGTTAAGAACAATGTGACGGAGTCTTCAAAGGTTTCAAAGCTATTTGAATTCCTGCAACGTATTTTGAACACATCAAGTGAAAAGAGTATCGTCTTCAGTCAATGGGCATCATTTTTTTATCTGTTGGAGAATTCTTTGAGGAGGAAAGGAATTGGTTTTCTGAGATATGATGGGAAGTTGACTCAGAAGCAGAGGGAGAAAGTTCTGGATGAATTCAACCAGACAAGAGAGAAAAGGGTTATGTTGATGTCACTAAAAGATGGTGGTGTGGGCTTGAACTTAACTGCAGCTTCAAATGTTTTCATTATGGTATGCTATGCCTCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGAATAGGACAAAACCGAAGGAAGAGTTGTAATTTATGGGGGTATTGTGAACAGGACACGGTGGAAGACCGATTGCAACAAGTTCAAGCTAGGAAACAAAGGTTGATATCTGGTACCCTCACAGATGATGAGGTTCGGACTGCTAGAATTCAAGATCTCAAAATGCTTTTCACACGAGAGTTTATTTATTTAGAAGGTGATTTATTTCCCAGCCGCCTGCAGAGCCGCGCCCCGTCGTCGCTCCAGATAAACCGCACCGTCGAGTGGAACGTCGCGATCCCGCTGCTGTCCCCGCTGGTCTCGTCGCCCCCTCCGCCGCCGCAGAAGGACGAGCCGCCACCGCCGCAGCAACAACGCCCGCCGGAAAAAGTTGTCTTCAAAAAGTGGCAGCACCCCGCCGCACCGTTTTGCTACGAACCACCTTCGCGGGTTCCTCCTTTCGTTAACGTGTAA
Predicted protein sequences of Glyma10g01091
>Glyma10g01091.1   sequence type=predicted peptide   gene model=Glyma10g01091   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NSLEDLYSLLRFLRVEPWCNLTLWQKLIQRPYENGDPRSLELAKVILRMLMLRRTKETKDKRGSVNNQNLNGTFMKPFSRDLKQVQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSDTQKRADLSRHARRFLQTNTECPEESNQNDPRQQAELNKLAKCSICMESPEDPVFTPCAHKFCRECLYSCWGTSAGGKCPIRRQLLQKDDLITYSSESPFKLDVKNNVTESSKVSKLFEFLQRILNTSSEKSIVFSQWASFFYLLENSLRRKGIGFLRYDGKLTQKQREKVLDEFNQTREKRVMLMSLKDGGVGLNLTAASNVFIMVCYASVEEQAIMRIHRIGQNRRKSCNLWGYCEQDTVEDRLQQVQARKQRLISGTLTDDEVRTARIQDLKMLFTREFIYLEGDLFPSRLQSRAPSSLQINRTVEWNVAIPLLSPLVSSPPPPPQKDEPPPPQQQRPPEKVVFKKWQHPAAPFCYEPPSRVPPFVNV*






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