Glyma10g01050 - SoyBase

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Report for Sequence Feature Glyma10g01050

Feature Type:	gene_model
Chromosome:	Gm10
Start:	747712
stop:	750533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g01050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06620	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:2025618-2027094 FORWARD LENGTH=365	SoyBase	E_val: 2.00E-145	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7I5H6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7I5H6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1L7J0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7J0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g01050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g01050

Paralog	Evidence	Comments
Glyma20g21983	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g01050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g007700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g01050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g01050

Limit To All Plant Sequences

>Glyma10g01050.3   sequence type=transcript   gene model=Glyma10g01050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCGATCAACATGGTCATTGGTTAATGGTCCTGTGTTTCGCAGTGTGTGTGTGTGTGTTAGCAGTATTTTATTCTCTTCTAGTACAAGCCTGCATTTGTTTTAGGCTTTAATTAAGCCTTACCTTCGTCCTGCATTGGTTTGTTAAACCCTTTCATTCTTATCTCCTGCTACTTTCTTGTATCAACATTACTAATTAAAAACTTTCAGGACAATATTTTGTATACAAGTTTAAGGAAGAGTTTCATGGCTGATTCAGATAGAGAAAAGGAGCTCAAGGCTTTTGATGACACAAAACTTGGTGTGAAAGGACTTGTTGATGCAGGCATCACCAAGATACCTCGCATTTTCCATCATCCACCAGATAACTTCAAGAAGGCCTCAGATTTAGGCTATAAAGATTACACTATTCCTGTTATAGACCTCGCAAGCATTCGTGAAGATCTGAGAGAACGCGAAAGGGTTGTTGAGAGAATCAAAGAAGCATCAGAGACATGGGGTTTCTTTCAGATTGTGAATCATGGCATCCCTGTGAGTACTCTTGAGGAGATGGTAGATGGGGTGCTAAGGTTTTTTGAGCAAGATAGTGAGGTCAAGAAGGAGTTTTATACTCGTGAGCTAAGACCATTTTTTTACACTAGCAATTATAACTTATATACTACTGCTCCAACTACTTGGAAGGACTCTTTCTACTGCAATTTGGCTCCTAATGCCCCTAAGCCAGAAGATTTGCCAGCAGTATGCAGAGACATACTGGTGGAATACTCAAATGAAGTATTGAAATTGGGGACTTTATTATTTGAGTTATTATCAGAAGCTCTTGGTCTGGATCCAACTTACTTAACCAATATTGGTTGCACTGAGGGGCTTTTTGCTTTTAGCCACTACTATCCTGCATGTCCTGAACCAGAATTAACTATGGGAACAGCAAAGCATTCTGATATGGATTTTATTACAGTGCTCTTACAAGGCCATATTGGTGGCCTCCAAGTTTTTCATAAGGACATGTGGATTGATTTACCCCCTCTAACTGGGGCCCTAGTTGTTAACATCGGTGATTTTTTGCAGCTTATCTCAAATGACAAATTCAAGAGCGCTCAGCATAGAGTACTGGCCAATCCTATAGGTCCAAGGGTGTCTATTGCATGCTTTTTTAGCACAGGTCTTAATCCAACTTCAAGGATTTATGGTCCCATCAAGGAACTTTTATCTGAAGACAATCCTGCAAAATACAGAGAATTTACCGTTCCTAAATTTTTAGCTCACCACAGAACAAAATGTCTGAATGGTACTTCTCCACTACTGCATTTCAGGATTTGACTAGGAAAATGTCGGTAAAAGATTCCATAACCTTATATCATTACCTTTGTTTCAGAGAATAATTATGTTGTTGAATTGTAGAACTTTCATTGCATAAATTTCTTGAGAATTTTCAATGAAAAGTTGGTGTTGAGGAGATAGCTTGGCGTTTTTGTCAATTGATTAAAGTCATTGGACTGAATTATATAATTATTTACATGGGAAATTATATTGACATTGAAGTTTGATTGAA

Coding sequences of Glyma10g01050

Limit To All Plant Sequences

>Glyma10g01050.2   sequence type=CDS   gene model=Glyma10g01050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCAGATAGAGAAAAGGAGCTCAAGGCTTTTGATGACACAAAACTTGGTGTGAAAGGACTTGTTGATGCAGGCATCACCAAGATACCTCGCATTTTCCATCATCCACCAGATAACTTCAAGAAGGCCTCAGATTTAGGCTATAAAGATTACACTATTCCTGTTATAGACCTCGCAAGCATTCGTGAAGATCTGAGAGAACGCGAAAGGGTTGTTGAGAGAATCAAAGAAGCATCAGAGACATGGGGTTTCTTTCAGATTGTGAATCATGGCATCCCTGTGAGTACTCTTGAGGAGATGGTAGATGGGGTGCTAAGGTTTTTTGAGCAAGATAGTGAGGTCAAGAAGGAGTTTTATACTCGTGAGCTAAGACCATTTTTTTACACTAGCAATTATAACTTATATACTACTGCTCCAACTACTTGGAAGGACTCTTTCTACTGCAATTTGGCTCCTAATGCCCCTAAGCCAGAAGATTTGCCAGCAGTATGCAGAGACATACTGGTGGAATACTCAAATGAAGTATTGAAATTGGGGACTTTATTATTTGAGTTATTATCAGAAGCTCTTGGTCTGGATCCAACTTACTTAACCAATATTGGTTGCACTGAGGGGCTTTTTGCTTTTAGCCACTACTATCCTGCATGTCCTGAACCAGAATTAACTATGGGAACAGCAAAGCATTCTGATATGGATTTTATTACAGTGCTCTTACAAGGCCATATTGGTGGCCTCCAAGTTTTTCATAAGGACATGTGGATTGATTTACCCCCTCTAACTGGGGCCCTAGTTGTTAACATCGGTGATTTTTTGCAGCTTATCTCAAATGACAAATTCAAGAGCGCTCAGCATAGAGTACTGGCCAATCCTATAGGTCCAAGGGTGTCTATTGCATGCTTTTTTAGCACAGGTCTTAATCCAACTTCAAGGATTTATGGTCCCATCAAGGAACTTTTATCTGAAGACAATCCTGCAAAATACAGAGAATTTACCGTTCCTAAATTTTTAGCTCACCACAGAACAAAATGTCTGAATGGTACTTCTCCACTACTGCATTTCAGGATTTGA

>Glyma10g01050.3   sequence type=CDS   gene model=Glyma10g01050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCAGATAGAGAAAAGGAGCTCAAGGCTTTTGATGACACAAAACTTGGTGTGAAAGGACTTGTTGATGCAGGCATCACCAAGATACCTCGCATTTTCCATCATCCACCAGATAACTTCAAGAAGGCCTCAGATTTAGGCTATAAAGATTACACTATTCCTGTTATAGACCTCGCAAGCATTCGTGAAGATCTGAGAGAACGCGAAAGGGTTGTTGAGAGAATCAAAGAAGCATCAGAGACATGGGGTTTCTTTCAGATTGTGAATCATGGCATCCCTGTGAGTACTCTTGAGGAGATGGTAGATGGGGTGCTAAGGTTTTTTGAGCAAGATAGTGAGGTCAAGAAGGAGTTTTATACTCGTGAGCTAAGACCATTTTTTTACACTAGCAATTATAACTTATATACTACTGCTCCAACTACTTGGAAGGACTCTTTCTACTGCAATTTGGCTCCTAATGCCCCTAAGCCAGAAGATTTGCCAGCAGTATGCAGAGACATACTGGTGGAATACTCAAATGAAGTATTGAAATTGGGGACTTTATTATTTGAGTTATTATCAGAAGCTCTTGGTCTGGATCCAACTTACTTAACCAATATTGGTTGCACTGAGGGGCTTTTTGCTTTTAGCCACTACTATCCTGCATGTCCTGAACCAGAATTAACTATGGGAACAGCAAAGCATTCTGATATGGATTTTATTACAGTGCTCTTACAAGGCCATATTGGTGGCCTCCAAGTTTTTCATAAGGACATGTGGATTGATTTACCCCCTCTAACTGGGGCCCTAGTTGTTAACATCGGTGATTTTTTGCAGCTTATCTCAAATGACAAATTCAAGAGCGCTCAGCATAGAGTACTGGCCAATCCTATAGGTCCAAGGGTGTCTATTGCATGCTTTTTTAGCACAGGTCTTAATCCAACTTCAAGGATTTATGGTCCCATCAAGGAACTTTTATCTGAAGACAATCCTGCAAAATACAGAGAATTTACCGTTCCTAAATTTTTAGCTCACCACAGAACAAAATGTCTGAATGGTACTTCTCCACTACTGCATTTCAGGATTTGA

Predicted protein sequences of Glyma10g01050

Limit To All Plant Sequences

>Glyma10g01050.2   sequence type=predicted peptide   gene model=Glyma10g01050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSDREKELKAFDDTKLGVKGLVDAGITKIPRIFHHPPDNFKKASDLGYKDYTIPVIDLASIREDLRERERVVERIKEASETWGFFQIVNHGIPVSTLEEMVDGVLRFFEQDSEVKKEFYTRELRPFFYTSNYNLYTTAPTTWKDSFYCNLAPNAPKPEDLPAVCRDILVEYSNEVLKLGTLLFELLSEALGLDPTYLTNIGCTEGLFAFSHYYPACPEPELTMGTAKHSDMDFITVLLQGHIGGLQVFHKDMWIDLPPLTGALVVNIGDFLQLISNDKFKSAQHRVLANPIGPRVSIACFFSTGLNPTSRIYGPIKELLSEDNPAKYREFTVPKFLAHHRTKCLNGTSPLLHFRI*

>Glyma10g01050.3   sequence type=predicted peptide   gene model=Glyma10g01050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSDREKELKAFDDTKLGVKGLVDAGITKIPRIFHHPPDNFKKASDLGYKDYTIPVIDLASIREDLRERERVVERIKEASETWGFFQIVNHGIPVSTLEEMVDGVLRFFEQDSEVKKEFYTRELRPFFYTSNYNLYTTAPTTWKDSFYCNLAPNAPKPEDLPAVCRDILVEYSNEVLKLGTLLFELLSEALGLDPTYLTNIGCTEGLFAFSHYYPACPEPELTMGTAKHSDMDFITVLLQGHIGGLQVFHKDMWIDLPPLTGALVVNIGDFLQLISNDKFKSAQHRVLANPIGPRVSIACFFSTGLNPTSRIYGPIKELLSEDNPAKYREFTVPKFLAHHRTKCLNGTSPLLHFRI*

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