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Report for Sequence Feature Glyma10g00950

Feature Type:gene_model
Chromosome:Gm10
Start:667729
stop:670566
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g00950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54700AT Annotation by Michelle Graham. TAIR10: phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535 SoyBaseE_val: 0ISS
GO:1901684GO-bp Annotation by Michelle Graham. GO Biological Process: arsenate ion transmembrane transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005351GO-mf Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity SoyBaseN/AISS
GO:0015114GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphate ion transmembrane transporter activity SoyBaseN/AISS
GO:0015144GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity SoyBaseN/AISS
GO:1901683GO-mf Annotation by Michelle Graham. GO Molecular Function: arsenate ion transmembrane transporter activity SoyBaseN/AISS
KOG0252 KOG Inorganic phosphate transporter JGI ISS
PTHR24064Panther FAMILY NOT NAMED JGI ISS
PTHR24064:SF16Panther SUBFAMILY NOT NAMED JGI ISS
PF00083PFAM Sugar (and other) transporter JGI ISS
UniRef100_I1L7H9UniRef Annotation by Michelle Graham. Best UniRef hit: Soybean phosphate transporter protein 4 n=1 Tax=Glycine max RepID=I1L7H9_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1L7H9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Soybean phosphate transporter protein 4 n=1 Tax=Glycine max RepID=I1L7H9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g00950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00950
ParalogEvidenceComments
Glyma02g00840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g006700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g00950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g00950
>Glyma10g00950.1   sequence type=CDS   gene model=Glyma10g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGAGAACTTGGAGTGCTGAATGCACTTGATGTGGCAAAGACACAATGGTACCACTTCACTGCAATTGTGATAGCTGGAATGGGTTTCTTTACTGATGCCTATGATCTCTTCTGCATTTCCCTAGTCACCAAGCTACTAGGGAGGCTATATTACACAGAACCAGGTGCACCAAAGCCGGGAACTCTTCCTCCAAGAGTTCAAGCTTCTGTGACTGGTGTTGCACTGTGTGGCACATTAGCTGGCCAACTATTCTTTGGTTGGCTTGGTGACAAAATGGGGAGAAAAAAAGTCTATGGACTAACTCTTATTCTCATGGTAGTCAGCTCCCTTGCCTCAGGACTCTCCTTTGGGTCAACTGCAGAGGGTGTCATGGCCACACTTTGCTTCTTCAGGTTCTGGCTAGGCTTTGGGATTGGTGGTGACTACCCTCTTTCTGCCACAATTATGTCTGAATATGCAAACAAGAAGACACGTGGCGCATTCATAGCCGCTGTGTTTGCAATGCAAGGATTTGGAATCCTGGCTGGTGGAGTGGTGGCATTGATTGTCTCATATGCATATGATCAAAAGTACAAGCTTCCTAGTTATGCACAGAATCCAGAAGCATCCTTGGATCCTTCATTTGACTATGTTTGGAGAATAGTTTTGATGTTTGGTGCAATTCCAGCTGCACTCACCTACTACTGGCGCATGAAGATGCCAGAGACAGCACGTTACACAGCCCTTGTGGCCAAGAATGCAAAACAAGCTGCTGCAGACATGTCTAAGGTGTTGCAAGTGGAACTTGAAGCTGAAGAGGAAAAGGTGATGAAATTGACAGAGAATGAGAGTAACAAGTATGGTTTGTTCACCAAGGAATTTGCGAAACGCCATGGCCTGCATTTGTTGGGAACCACCACCACTTGGTTCTTGTTGGACATAGCATTCTACAGCCAAAATCTTTTCCAAAAGGACATTTTCAGTGCAATTGGGTGGATCCCTCCAGCAAAGGAAATGAATGCAATCCACGAGGTGTATAAGATTGCAAGAGCACAAACACTTATAGCACTGTGCAGTACTGTGCCAGGTTACTGGTTCACAGTGGCATTAATTGATTACATGGGCCGTTTCGCCATCCAATTGATGGGGTTCTTCTTCATGACCGTGTTCATGTTTGCTTTGGCTATACCATATCATCACTGGAGTGAGAAAGACAACAGAATTGGGTTTGTGGTGATGTACTCTTTCACCTTTTTCTTTGCCAATTTTGGTCCAAATGCCACCACATTTGTTGTGCCAGCAGAAATTTTCCCTGCAAGGCTAAGGTCCACTTGCCATGGAATCTCTGCTGCTGCAGGAAAAGCTGGTGCAATTGTGGGTGCATTTGGGTTCCTATATGCTGCACAAAGCAAGGACCCTTCCAAGACTGATGCAGGGTACCCTACTGGTATTGGGATTAAGAACTCACTCATTATGCTTGGTGTGATCAACTTCATTGGGATGCTATTCACCTTGCTGGTTCCTGAAGCAAAGGGGAAATCACTGGAGGAGTTGAGTGGGGAGAATAATGAAAATGATGCTGAACATGCAGTGTCTGCTAGGACAGTTCCTGTTTGA
Predicted protein sequences of Glyma10g00950
>Glyma10g00950.1   sequence type=predicted peptide   gene model=Glyma10g00950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGELGVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRLYYTEPGAPKPGTLPPRVQASVTGVALCGTLAGQLFFGWLGDKMGRKKVYGLTLILMVVSSLASGLSFGSTAEGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGVVALIVSYAYDQKYKLPSYAQNPEASLDPSFDYVWRIVLMFGAIPAALTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEEEKVMKLTENESNKYGLFTKEFAKRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKEMNAIHEVYKIARAQTLIALCSTVPGYWFTVALIDYMGRFAIQLMGFFFMTVFMFALAIPYHHWSEKDNRIGFVVMYSFTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPSKTDAGYPTGIGIKNSLIMLGVINFIGMLFTLLVPEAKGKSLEELSGENNENDAEHAVSARTVPV*






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