Glyma10g00920 - SoyBase

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Report for Sequence Feature Glyma10g00920

Feature Type:	gene_model
Chromosome:	Gm10
Start:	638622
stop:	642407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43330	AT	Annotation by Michelle Graham. TAIR10: Lactate/malate dehydrogenase family protein \| chr5:17390552-17392449 FORWARD LENGTH=332	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006108	GO-bp	Annotation by Michelle Graham. GO Biological Process: malate metabolic process	SoyBase	N/A	ISS
GO:0044262	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016615	GO-mf	Annotation by Michelle Graham. GO Molecular Function: malate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0030060	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-malate dehydrogenase activity	SoyBase	N/A	ISS
KOG1496	KOG	Malate dehydrogenase	JGI		ISS
PTHR23382	Panther	MALATE DEHYDROGENASE	JGI		ISS
PF00056	PFAM	lactate/malate dehydrogenase, NAD binding domain	JGI		ISS
PF02866	PFAM	lactate/malate dehydrogenase, alpha/beta C-terminal domain	JGI		ISS
UniRef100_H2D5S3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Malate dehydrogenase n=2 Tax=Glycine max RepID=H2D5S3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_H2D5S3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Malate dehydrogenase n=2 Tax=Glycine max RepID=H2D5S3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00920

Paralog	Evidence	Comments
Glyma02g00810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g006500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g00920

Limit To All Plant Sequences

>Glyma10g00920.2   sequence type=transcript   gene model=Glyma10g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTTTGACTTACCTTTGTTGAAGGGACTGTTGCATAAACATTATGAATAACATTAGCAATTTTGATTTAACAGGTTTGTTTTAGTGACTTATATGATCCTCAAGATTATTAAATCCTAGGATATTATTTGCTTCAGGTGTTGTTGCTACAACCGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCAGTGATGGTTGGTGGATTCCCTAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAAGAATTTGCTCCATCTATTCCCGAGAAAAACATTTCTTGTTTGACTAGATTGGACCACAATAGGGCACTGGGCCAAATTTCTGAGAGACTGAACATTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAATATCCTGATGTTAACCATGCAACTGTTGGGGAGAAGCCCGTCCGCGAGCTTATAGCTGATGATGCCTGGTTGAATGGTGAATTCATTACTACTGTTCAACAACGTGGTGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGATTGGGTTCTTGGAACTCCTCAGGGCACCTGGGTGTCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTGATCTATTCATTCCCTGTCACTTGTGCCAATGGGGAATGGACAATAGTTCAAGGACTTCCCATTGATGAGTTCTCAAGGAAGAAGTTGGACTTGACCGCAGAAGAGCTTTCTGAGGAGAAGGCATTGGCTTACTCATGCCTAAATTAGAGACCATCGCTCCTTCTTGGCTACTGTCCTTGTTAGTAGGTTCCCATGGTTTGCCCACAGAAGTGTAGCTTCAATTTTGAATAATGCTCCTTCTAAGATACCAAGGAACTATCACTCGAGAGAGTTTGTCTTTCATTGGAATTACTTGTATTTCAACATCTAATCCTTTTAGGAGGATAGTATATTTGAGCTTTACAGTTTTAGTCATGGAATTAGACCATGGGCCGCATATTGAATTTTGGATCAGTCCTCTAATTTTATGTGTTAGTGCCCCTTTTTTATGGCTAGAACTTTTTGCTGTGTTTGTGGTGGCTGTACAAGATTTCTTGATGTATGTGGGATGCACAAGCGTGCAAACTCATACGTAGAGTATTATGCACTGCTATTACGCAATAAGGTCATCATGGATTATTTTTAGCTCTAGCTTGCACTCGCTCAAACTCACCTTCTTCTTAGCAACATTTTCTCTAACAAA

Coding sequences of Glyma10g00920

Limit To All Plant Sequences

>Glyma10g00920.1   sequence type=CDS   gene model=Glyma10g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCCGCAGGGCAAATTGGATATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGCTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCAGCAGCAGAGTCGTTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCTACAACCGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCAGTGATGGTTGGTGGATTCCCTAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAAGAATTTGCTCCATCTATTCCCGAGAAAAACATTTCTTGTTTGACTAGATTGGACCACAATAGGGCACTGGGCCAAATTTCTGAGAGACTGAACATTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAATATCCTGATGTTAACCATGCAACTGTTGGGGAGAAGCCCGTCCGCGAGCTTATAGCTGATGATGCCTGGTTGAATGGTGAATTCATTACTACTGTTCAACAACGTGGTGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGATTGGGTTCTTGGAACTCCTCAGGGCACCTGGGTGTCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTGATCTATTCATTCCCTGTCACTTGTGCCAATGGGGAATGGACAATAGTTCAAGGACTTCCCATTGATGAGTTCTCAAGGAAGAAGTTGGACTTGACCGCAGAAGAGCTTTCTGAGGAGAAGGCATTGGCTTACTCATGCCTAAATTAG

>Glyma10g00920.2   sequence type=CDS   gene model=Glyma10g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGTGGATTCCCTAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAAGAATTTGCTCCATCTATTCCCGAGAAAAACATTTCTTGTTTGACTAGATTGGACCACAATAGGGCACTGGGCCAAATTTCTGAGAGACTGAACATTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAATATCCTGATGTTAACCATGCAACTGTTGGGGAGAAGCCCGTCCGCGAGCTTATAGCTGATGATGCCTGGTTGAATGGTGAATTCATTACTACTGTTCAACAACGTGGTGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGATTGGGTTCTTGGAACTCCTCAGGGCACCTGGGTGTCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTGATCTATTCATTCCCTGTCACTTGTGCCAATGGGGAATGGACAATAGTTCAAGGACTTCCCATTGATGAGTTCTCAAGGAAGAAGTTGGACTTGACCGCAGAAGAGCTTTCTGAGGAGAAGGCATTGGCTTACTCATGCCTAAATTAG

Predicted protein sequences of Glyma10g00920

Limit To All Plant Sequences

>Glyma10g00920.1   sequence type=predicted peptide   gene model=Glyma10g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNIQVSDVKNVIIWGNHSSTQYPDVNHATVGEKPVRELIADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWTIVQGLPIDEFSRKKLDLTAEELSEEKALAYSCLN*

>Glyma10g00920.2   sequence type=predicted peptide   gene model=Glyma10g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNIQVSDVKNVIIWGNHSSTQYPDVNHATVGEKPVRELIADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWTIVQGLPIDEFSRKKLDLTAEELSEEKALAYSCLN*

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