Glyma10g00900 - SoyBase

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Report for Sequence Feature Glyma10g00900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	623244
stop:	631395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14368	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr4:8274279-8278810 REVERSE LENGTH=1106	SoyBase	E_val: 0	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF25	Panther	REGULATOR OF CHROMOSOME CONDENSATION-RELATED	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
PF01363	PFAM	FYVE zinc finger	JGI		ISS
PF08381	PFAM	Disease resistance/zinc finger/chromosome condensation-like region	JGI		ISS
UniRef100_G7I4N4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase Nek9 n=1 Tax=Medicago truncatula RepID=G7I4N4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C36B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C36B related cluster n=1 Tax=unknown RepID=UPI000233C36B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00900

Paralog	Evidence	Comments
Glyma02g00790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g006300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g00900

Limit To All Plant Sequences

>Glyma10g00900.1   sequence type=CDS   gene model=Glyma10g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGATCTTTCTAGCTACGGGAGTCATGAGCGCGATATTGAACAAGCATTCATTACTTTGAAAAAGGGCACTCAGTTAGTAAAGTATAGTCGAAAAGGGAAGCCAAAACTCTGTACATTCAGGATCTCATCGGATGAAACGAAACTGATTTGGATATCTCATGGAAGGGAAAAGAATCTAAAATTGTCTTCTGTTTCACGCATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAGGGGGAACGGTCACTTGATCTGATTTGCAAGAACCAAGCTGAGGTAGAGGTATGGTTTTCAAGCCTTAAGGCATTAATTTCCCCTGGAGAGCGTATTAGGCGTGGAACAAGTGATTTATCCAATGATAGTGTTGACTTAATTCCAAATGATCGTCCTTATGCTGGAACACTAGAGTTTGCATCAAGCATTGCCCGTGGCAGGTTTTCTTTTGAATCAGTGTCTCATGAATCTACATCATCTTGGTCTAGATCAGAAACAAATATGCCAGTAAGGACAAGTTGTGGAGATGGTTCGCGTGTTAGTGTATCAAGTGTTAGTCACTCAAGTAGCGTAGGATCAGGACTAGATGACATAGAATCTCTAGGTGATGTTTATATATGGGGAGAGGTTTGGGCAGATGGCAATTCATTTGATGGATTGGGGAGTCAACTTCAAGCCTTTTGTAAGACAGATGTGCTGACTCCTAAACCGTTGGAGTCTGATGTTGTTCTTGATGTTCATCAGATTGGTCCTGGTGATCGTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGAGGATTCTGGTGGAAGACTTGGTCATGGATTTGAAAAAGATTTCGGTCGACCTCATCTTGTGGAATCCCTGGCAATTACCAATGTGACTTTTGTTGCGTGTGGCGAGTATCATTCTTGTGCTGTGTCCACATCTGGTGACCTATTCACCTGGGGTGATGGTACACATGGTGCAGGACTTCTTGGTCATGGCACTGATGTTAGCTACTGGATACCAAAAAGGGTTAGTGGCCCTTTAGAGGGACTTCAGGTTGTAGCTGTAGCATGTGGAACATGGCATTCAGCATTAGCAACCTCCAATGGTAAGTTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTGGGCCATGGAAACCGAGCGAGTGTGGCATATCCAAAGGAGGTACAATTATTGAGTGGATACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACTCAGCAGCCATTATAGATGTTATGGATCTTTCTGGTTCAAAGGCTTCAGCCAAGAGGCTCTTCACGTGGGGTGATGGTGACCAATATCGTTTGGGTCATGCTAACAAGGAAACTTACCTTGAACCAACTTGTGTAGCTGCAGTTGCTGAATATAATTTTCACCAGGTTGCATGTGGGTACACTATGACTGTTGCACTCACTGCATCTGGTCATGTTTTTAGCATGGGAGGCACAACATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTGCCGATTCTAGTGCGAGATAAGTTAGTAGGAGAGTTTGTGGAGGAAATATCATGTGGTGCCAATCATGTTGCTGTGTTGACTTCAAGAAGTGAGCTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGATGATAAGAAATCTCCAACATTGGTGGAAGCCTTGAAAGACAGGCATGTTAAGAACATCTCATGTGGCTCGACCTTTACATCTTGCATATGCTTACATAAATGGGTTTCTGGAGTTGACCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTCACCCGAAAAAGGCACAATTGCTATCATTGTGGGTTGGTATATTGCCATCCTTGTAGTTCAAAAAAGGCATCAAAAGCAGCACTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATGCTAAGCTAAAAGGTTCTGATAGTGCTTCCGATTTTAATAGGGAAATTAGTCGTCCTTCTAGTTCCGTATATGGAAGGGAAAGTTTTCACCGGGGAGAGGTAAGGTCTTCAAGAGTTCTCTTGCCTCCTACCACAGAACCGGTAAAATACCTAGAGATTAGGACTAATAAGCCTGGAAATATGCATGACTTTTCTTCCATAGTCCGAGCTGCTCAAGTTCCTACCAGTTTACAATTGAAAGATGTTGCATTTCCAATTTCGTTGAGTTCTGCGCAGAATGTTTACAAACCTGTTATACAGCCAACTCCACCAACACCGGCTACTCCAATACCTATGTCACCATATGCTAGAAGACCACCCAGTCCACCGCGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTATTGATAATTTAAGGAAGAAAAATGATCATTTGAATCAACAAGTCTCAAAATGGCAAAACAATAATCAAAATTTGAAGCAGAAGAGTGACATGCAAGACATGAAGATTCGGGAGCTTCAGAAAAATATTGAAGAAGCCGTGTCACGAGTTGGAGAGGAATCTTCTAAGCTTAGAAAAGCAAAGGAATTAATTAAGTCCTTGACAGATAAGTTGAGGGAAGTGACTGAGAAGTTGCCACTTGAGATTCCGGACAACGAGACCTTGAGAACCATGCATGCTCAAGCTGAAGAATTTCTTCATGAAGAAAAAGATTTTGAATCTTCTTCCTCCCCACAGAGCCTTGAGTCTGAGCAACAAAGTGCACCTGATGTACCTGCCTCAGAAAGCGACTCTTCAAAACTCCAAGAGCAAAGAATGGAAGGAAATGATGATGCTTTTGGGGTTGTTCCATCTATAGATGGAGAAAATATTCTTGAAGAAAGCAGCAACTCATCTGTATCTGGTCCAGTAGTGACTTCGCCAAGCTCAGGAAATGGTTCAAAATTACGTGACACTGGTATACCTGTGACAGAAGGAGAAAAATCAGTCATTGAACAATTTGAGCATGGTGTTTATGTCACACTCGTAGTACTACCTCGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGGAGATTCAACGAGAAGCAAGCAGAAGAATGGTGGAACCAAAACAAAGATAAGGTGCATAGTAAATACAATTTACCAATCACAAAGAATGCAACTACTGGATCATCTATCATACCTCCACAAGCTGAAGAAAAATGTGAGGCATTACCTTCTTCCTAA

Predicted protein sequences of Glyma10g00900

Limit To All Plant Sequences

>Glyma10g00900.1   sequence type=predicted peptide   gene model=Glyma10g00900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADLSSYGSHERDIEQAFITLKKGTQLVKYSRKGKPKLCTFRISSDETKLIWISHGREKNLKLSSVSRIIPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKNQAEVEVWFSSLKALISPGERIRRGTSDLSNDSVDLIPNDRPYAGTLEFASSIARGRFSFESVSHESTSSWSRSETNMPVRTSCGDGSRVSVSSVSHSSSVGSGLDDIESLGDVYIWGEVWADGNSFDGLGSQLQAFCKTDVLTPKPLESDVVLDVHQIGPGDRHIALVTRQGEVFTWGEDSGGRLGHGFEKDFGRPHLVESLAITNVTFVACGEYHSCAVSTSGDLFTWGDGTHGAGLLGHGTDVSYWIPKRVSGPLEGLQVVAVACGTWHSALATSNGKLFTFGDGRFGVLGHGNRASVAYPKEVQLLSGYKAIKVACGVWHSAAIIDVMDLSGSKASAKRLFTWGDGDQYRLGHANKETYLEPTCVAAVAEYNFHQVACGYTMTVALTASGHVFSMGGTTYGQLGNPNSDGKVPILVRDKLVGEFVEEISCGANHVAVLTSRSELYTWGRGANGRLGHGDTDDKKSPTLVEALKDRHVKNISCGSTFTSCICLHKWVSGVDQSVCSDCRQPFGFTRKRHNCYHCGLVYCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDSASDFNREISRPSSSVYGRESFHRGEVRSSRVLLPPTTEPVKYLEIRTNKPGNMHDFSSIVRAAQVPTSLQLKDVAFPISLSSAQNVYKPVIQPTPPTPATPIPMSPYARRPPSPPRSTSPGFSRSLIDNLRKKNDHLNQQVSKWQNNNQNLKQKSDMQDMKIRELQKNIEEAVSRVGEESSKLRKAKELIKSLTDKLREVTEKLPLEIPDNETLRTMHAQAEEFLHEEKDFESSSSPQSLESEQQSAPDVPASESDSSKLQEQRMEGNDDAFGVVPSIDGENILEESSNSSVSGPVVTSPSSGNGSKLRDTGIPVTEGEKSVIEQFEHGVYVTLVVLPRGYKVFKRIRFSKRRFNEKQAEEWWNQNKDKVHSKYNLPITKNATTGSSIIPPQAEEKCEALPSS*

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