SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69070 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). | chr1:25967421-25971389 REVERSE LENGTH=9 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2147 | KOG | Nucleolar protein involved in 40S ribosome biogenesis | JGI | ISS | |
| PTHR23183 | Panther | NOP14 | JGI | ISS | |
| PF04147 | PFAM | Nop14-like family | JGI | ISS | |
| UniRef100_B9RUI4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nop14, putative n=1 Tax=Ricinus communis RepID=B9RUI4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JB61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JB61_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g00840 not represented in the dataset |
Glyma10g00840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g005700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g00840.2 sequence type=CDS gene model=Glyma10g00840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAATCATCAAAACGCAGCGTCGGAACCAGCAGCACCGACTCGAAGAAGAAGAAGAAGAACAAAAGGAGCAAGAAGTTCGGTCCAGAAGGCGTGGCCATGAAAGTGAAAGCCAACAACAACAACAATGGCACTGCCTCCAATCCCTTCGAGTCGATTTGGTCGCGGAGGAAATTCGAGGTGCTAGGGCAGAAGCGGAAGGGCGAGGCACGGCGCATGGGGCTGGCGCGCTCCCTGGCGATCCAGAAGCGCAACGACACGCTCCTCAAGGAGTACCACCAGAGCGCCAAGTCCTCCCTCTTCGTCGACAAGCGAATCGGGGAGAAAGATGAGGCGCTCGATGACTTCGGGAAAGCCATCTTGCGATCCCAACGCGAACGCCAGCTGAACATGAAGCTGAGCAAGAAAAGCAAGTATCACTTGTCTGATGGAGAGGAAGATGACTTTGAGGGAATTGATTCTCTTGGAAGAGATGATTTTGAGGATGAGATGCTTCCTGACGATGTTGATGCTGAGACTGATGAGAAATTAAATTTGGTTCAGCGGAGCATGCAGATTCCGGGGGAAATTAGTGCGGATGATGGGGAGGAAAATAGACATAAAAGCAAGAAGGAAGTGATGGAAGAAATTATCTCAAAAAGCAAATTTTACAAGGCTCAAAAGGCGAAAGACAAAGAAGAAAATGAAAACTTGGTGGAAGAATTGGACAAGGATTTCACTTCCTTGGTTCACTCTGAAGCCTTGTTATCTTTGACTGAACCCAACAAGATGAATGCTTTGAAGGCTCTGGTGAACAAAAGTATTTCAAATGAGCAAAGTAATAAGGACTGCATGTTTGCTACTCGGACAATGGGTAATTCTGTGCAGGAAAAACCTGATGATTATGACAAACTTGTCAAACAAATGGGATTGGAAATGCGTGCTCGCCCTTCAGATAGGACAAAGACACCAGAAGAGATTGCTCAGGAGGAAAAAGAACGTCTAGAGGAATTGGAGGAAGAGCGGCAGAAGAGGATGGTTGCTGCTGAAGATTCAAGTGATGAAGACAGTGAAGATTCAGAAAAGCCATCTGAACAGAAACCAAGATCTATCTCTGGTGATGATCTTGGTGATTCCTTTTCTGTTAATAAACAAATTATGACCAAGAAGGGTTGGGTTGATGAGATTCTTAAAAGAAGAGATGAGAAAGATTCTGCTAGTGAAGATGATGATGGTGAAGATTCTGACAATTTGGGAAGCTCTGGAGATGCCGATGAAGGATCAGATGAAGATCTTGATGAACATGAGAAGGATCTTTCTTTAAAAGATTGGGAACAAAGTGATGATGATGATATTGGTGCAGATTTAGAAGATGAAGATGATAGTGATGAGGATATAGAAACAGCTTCAGAAGACCTTGATGAGGTAAAAGGATTGGATGCTGCAGTTCATATAAAAGCAAAAAGAAATGCTTCTGTTGAAAGTGTAAAAAAAGATAAGGATTCTTCAGATGCCAAGAAGATAGATGTTGGAGGAAAACAGTCAAAAGAGTTGGACATTCCTTATATAATTCAAGCTCCGAAGACTTTTGAAGAATTATGTTCACTGGTGGATAAACATTCAAATGACAACATTATTTTGATTATCAATCGGATTCGGAAAAGTAATCCAATCACACTCGCAGCAGAAAATCGAAAGAAAATGCAAGTATTCTATGGAGTATTGTTGCAATATTTTGCTGTTTTGGCAAATAAGGAACCTCTTAATGTTGAGCTACTCAATATGCTGGTGAAACCGTTGATAGAGATGAGTATGGAAATCCCATACTTTGCTGCAATATGTGCTCGTCGCAGAATAGAAACTACTAGAAAACAATTCATTGAGAGTATCAAACAATCAGAAAGTAGCAGTTGGCCTTCTTCAAAAACGTTGTGCCTCTTGCGTTTGTGGTCCATGATATTTCCATGCTCTGACTTTAGGCATCCAGTTATGACTCCTGTGATATTGTTGATGTGTGAATATCTGATGCGTTGCCCTATAGTATCTGGTCGGGATATTGCCATTGGCTCTTTCTTATGCTCTATGCTTCTCTCAGTATTTAGACAGTCTCGGAAATTCTGTCCCGAAGCAATAATATTTCTTCGAACTTCGCTGTTGGCAGCTACTGAAAGTAAACATGTTTCAGATGAAGATTCCCAGTTATATCATCTTATGGAACTGAAAGCTCTCAAGCCTCTCCTATGCATACACGAGATAGTGAATGAGATTAGTCCTCTGAATTTCTTCAAGATAATAGACATGCCAGAAGACTCTTCTTTCTTCACTTCTGTTAGTTTCAGGGCTAGTGTATTAGTTGCAGTCGTTGAAACTCTACAAGGATACGTTAACGTCTATGAAGGCTTAAGTTCATTTCCTGAAATATTCCTACCAATTTTGAAATTATTAAATGAAATAGCAGAACAGAAAAATATGTCAAATGCATTACGAGATAAAATTAAAGATGTGGCTGAGCTCATTAAGTTGAAAGTGGACGAGCATCACACTTTGAGGCGACCACTTCAAATGCGGAAACAAAAGCCAGTACCAATCAAATTACTGAATCCCAAGTTTGAGGAGAACTATGTCAAGGGCAGAGACTATGATCCTGACCGTGAACGAGCTGAACTGAGAAAATTGAAGAAACATTTGAAGCGTGAAGCTAAAGGGGCTGCACGAGAATTGCGTAAAGACAACTACTTCTTGCTGGAGGTGAAGGAAAAAGAGAGGTCTTTACAGGAAAAAGATAGAGCAGAGAAGTATGGAAGAGCTAAAGCTTTCCTTCAAGAGCAAGAACATGCCTTCAAATCTGGACAACTAGGAAAAGGTAGGAAGAGGAGGAGATAA
>Glyma10g00840.2 sequence type=predicted peptide gene model=Glyma10g00840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKSSKRSVGTSSTDSKKKKKNKRSKKFGPEGVAMKVKANNNNNGTASNPFESIWSRRKFEVLGQKRKGEARRMGLARSLAIQKRNDTLLKEYHQSAKSSLFVDKRIGEKDEALDDFGKAILRSQRERQLNMKLSKKSKYHLSDGEEDDFEGIDSLGRDDFEDEMLPDDVDAETDEKLNLVQRSMQIPGEISADDGEENRHKSKKEVMEEIISKSKFYKAQKAKDKEENENLVEELDKDFTSLVHSEALLSLTEPNKMNALKALVNKSISNEQSNKDCMFATRTMGNSVQEKPDDYDKLVKQMGLEMRARPSDRTKTPEEIAQEEKERLEELEEERQKRMVAAEDSSDEDSEDSEKPSEQKPRSISGDDLGDSFSVNKQIMTKKGWVDEILKRRDEKDSASEDDDGEDSDNLGSSGDADEGSDEDLDEHEKDLSLKDWEQSDDDDIGADLEDEDDSDEDIETASEDLDEVKGLDAAVHIKAKRNASVESVKKDKDSSDAKKIDVGGKQSKELDIPYIIQAPKTFEELCSLVDKHSNDNIILIINRIRKSNPITLAAENRKKMQVFYGVLLQYFAVLANKEPLNVELLNMLVKPLIEMSMEIPYFAAICARRRIETTRKQFIESIKQSESSSWPSSKTLCLLRLWSMIFPCSDFRHPVMTPVILLMCEYLMRCPIVSGRDIAIGSFLCSMLLSVFRQSRKFCPEAIIFLRTSLLAATESKHVSDEDSQLYHLMELKALKPLLCIHEIVNEISPLNFFKIIDMPEDSSFFTSVSFRASVLVAVVETLQGYVNVYEGLSSFPEIFLPILKLLNEIAEQKNMSNALRDKIKDVAELIKLKVDEHHTLRRPLQMRKQKPVPIKLLNPKFEENYVKGRDYDPDRERAELRKLKKHLKREAKGAARELRKDNYFLLEVKEKERSLQEKDRAEKYGRAKAFLQEQEHAFKSGQLGKGRKRRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
