Glyma10g00830 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma10g00830

Feature Type:	gene_model
Chromosome:	Gm10
Start:	565356
stop:	578651
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14350	AT	Annotation by Michelle Graham. TAIR10: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein \| chr4:8256353-8259934 REVERSE LENGTH=548	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009524	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0605	KOG	NDR and related serine/threonine kinases	JGI		ISS
PTHR24358	Panther	SERINE/THREONINE-PROTEIN KINASE 38	JGI		ISS
PTHR24358:SF32	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00433	PFAM	Protein kinase C terminal domain	JGI		ISS
UniRef100_I1L7G5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7G5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q53VE2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr protein kinase n=2 Tax=Lotus japonicus RepID=Q53VE2_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g00830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g005600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g00830

Limit To All Plant Sequences

>Glyma10g00830.3   sequence type=transcript   gene model=Glyma10g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAAATATTATTTTAAAAAGTGCCTTACAACTTTCGATATGAACTTTCAACTATGAACTTTCAACTCACTCGAACAAAACAACAAAAAGCTTAAAACCAGCAAATTGAATCGCTGCATCTCATTCACATCACTGTCACCATCATCAACCACAACACCAACACCAACAACGCTAACTGCTTCTCTACGCTCTCTCTCTCTCCCTCTCTCTCAACTTCCAGATTCAAGAAGTAGCAGTTACTGTGCCTTTGGTTCTTCTGAAATATAAAAACGGCAGCTTGAGAGGTGAAGAAATAAAATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCACTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGATCCACACCAATATATTACAGGACTTCTTGATGGCCATGGTCACAACCAAATGTTGATGACTACTGATTGTTATACTTTTTCTCACATTCTTTTGTTAGATTGGAGTTGATGGATTTGGAAGCCAGGTCCCTGAAATTTCTGGTTTTTGGATGACTGATTTTTTTGGCTGACTGGGATATTTTCCGTGTAGAAAAATCTTTTAAGGTGTATATTCTTCAATTCACCTTCTATCAAACTGCAATGTGTTAAATATCATAGTTTTTTTTCCTCTTGTAATTGAGTTACTGTTGAAAGATGAAGTGCTGACAAGGATGTGCAATTCACACATTTTTGTACAGTATATAGAGATTGATCGGTTTGTAGGTTAACATTTTCTGTTATGTGACATTAGGGTCCAAACTTTACAACTGAAATCCTGCCTTTGAGTTTATGCCTTTTTTTCTGTCTTTATTTAGTAACATGCAATCG

Coding sequences of Glyma10g00830

Limit To All Plant Sequences

>Glyma10g00830.2   sequence type=CDS   gene model=Glyma10g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCACTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA

>Glyma10g00830.3   sequence type=CDS   gene model=Glyma10g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTACAAGACGGTGGTTTAGTAAGTTCAAGTCAAATGATAAAATGAAGTCTGAAAAGAACAAAGAAACTACAGGCGTGACAAAAGAAGGGTCAAGACCCCCAACAAATGAAGAAGCACCTTCAAATGTAACCAAACAGAGGGTTGAAGCTGCAAAGCAGTATATCGAAAATCATTATAAGAAGCAGATGCAAAGCCTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAACAACACAACTTGCTTCAGCATTTGGAGAAAAAGGAGAGGGAAATCATGCGCCTTCAGAGACATAAGATGGGGGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGGGAGAAGGCCACTGGCCATGTTTATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTACGAAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGAAATCTACTTGCTGAAGTTGACAGCAATTGCATTGTTAAACTTTATTGTTCCTTTCAAGATGAGGAGTATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAGGATATACTCACAGAAGATGAGGCCAGGTTCTATGTTGGGGAGACTGTCCTAGCCATAGAGTCAATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTAGATAGAAATGGCCACATGAAATTATCAGATTTTGGATTATGTAAACCGCTAGACTGCAGTAACCTTCAAGAAAAGGACTTCTCTGTTGGAATGAACAGAAGTGGAGCCCTCCAAAGTGATGGGCGTCCTGTGGCTCCTAAACGAACCCAACAGGAACAACTGCAGCATTGGCAGAAAAATCGACGAATGCTTGCCTATTCTACAGTTGGAACACCTGATTATATTGCTCCAGAAGTTCTTCTGAAGAAAGGATATGGCGTGGAATGTGATTGGTGGTCTCTAGGAGCTATAATGTATGAAATGCTTGTGGGGTATCCTCCCTTTTATTCAGACGAACCAATGTTGACTTGTAGAAAGATAGTAAACTGGAGAACTACTTTAAAGTTTCCAGAAGAAGCTAAACTTTCAGCAGAGGCAAAGGATCTTATTTGTAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTGTTGAATGGGACAAATTATACCAAATGAAAGCTGCTTTCATACCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGGCGGACAAGCAAACTGTACCTTCCTCAAAGGCAGGGCCGTGGAGAAAGATGCTGCCTTCTAAAGATATTAACTTCGTCGGCTACACATACAAGAATTTTGAAATCGTGAATGATCCTGAAATACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAAAGACCATCTATTAAGTCACTATTTGATGATGAATCAGCTACGGCTGCCAATCAACCTGTCAGAGGGAGCTTCTTAAACCTCTTACCTCCTCAAATGGAAGTTCCTGAAAAAAGTGAATCACAATGA

Predicted protein sequences of Glyma10g00830

Limit To All Plant Sequences

>Glyma10g00830.2   sequence type=predicted peptide   gene model=Glyma10g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METTRRWFSKFKSNDKMKSEKNKETTGVTKEGSRPPTNEEAPSNVTKQRVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQHLEKKEREIMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGMNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTTLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADKQTVPSSKAGPWRKMLPSKDINFVGYTYKNFEIVNDPEIPGIAELKKKSTKPKRPSIKSLFDDESATAANQPVRGSFLNLLPPQMEVPEKSESQ*

>Glyma10g00830.3   sequence type=predicted peptide   gene model=Glyma10g00830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METTRRWFSKFKSNDKMKSEKNKETTGVTKEGSRPPTNEEAPSNVTKQRVEAAKQYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQHNLLQHLEKKEREIMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSVGMNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTTLKFPEEAKLSAEAKDLICRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFEEADKQTVPSSKAGPWRKMLPSKDINFVGYTYKNFEIVNDPEIPGIAELKKKSTKPKRPSIKSLFDDESATAANQPVRGSFLNLLPPQMEVPEKSESQ*

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