SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08530 | AT | Annotation by Michelle Graham. TAIR10: 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486 | SoyBase | E_val: 0 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial electron transport, NADH to ubiquinone | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005747 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0008137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016651 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG2658 | KOG | NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit | JGI | ISS | |
| PTHR11780 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) | JGI | ISS | |
| PF01512 | PFAM | Respiratory-chain NADH dehydrogenase 51 Kd subunit | JGI | ISS | |
| PF10531 | PFAM | SLBB domain | JGI | ISS | |
| PF10589 | PFAM | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | JGI | ISS | |
| UniRef100_G7I3R9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH-quinone oxidoreductase subunit F n=1 Tax=Medicago truncatula RepID=G7I3R9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L7G4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7G4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g00820 not represented in the dataset |
Glyma10g00820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g005500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g00820.1 sequence type=CDS gene model=Glyma10g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGGCATTCTTTCCGTAAGGACAGCCTTGGTTCAACATCATAGTGAGAAATTGGGCCTTGGTTTCAGAGTATTTAGCACTCAGGGTGCTTCCACTGCTAGTACCCCACAGCCGCCACCACCACCTCCTCCGCCGGAGAAAACCCATTTTGGCGGCCTTAAGGATGAGGACAGGATATTTACTAACTTATATGGGCTGCATGATCCTTTTCTCAAAGGTGCCATGAAACGTGGGGATTGGCATCGAACGAAAGATTTGGTAGTTAAGGGTACTGATTGGATTGTGAATGAAATGAAGAAGTCTGGCCTCCGTGGGCGTGGTGGTGCTGGTTTCCCTTCGGGTCTCAAATGGTCATTCATGCCAAAAGTATCTGACGGCCGCCCTTCATATCTTGTTGTTAATGCTGATGAAAGTGAACCTGGAACTTGCAAAGACAGGGAAATCATGCGGCATGACCCGCATAAATTGTTGGAAGGTTGCTTGATTGCTGGAGTGGGAATGAGGGCTAGTGCCGCTTACATCTACATCAGGGGTGAATATGTCAATGAACGTAAGAATCTCGAAAAGGCTAGGGAAGAGGCTTATGCTGCTGGTTTGTTGGGTAAGAATGCTTGTGGCTCAGGCTATGATTTTGATGTTCATATCCACTACGGTGCTGGAGCTTATATTTGTGGTGAGGAAACAGCCCTCTTGGAGAGCCTTGAAGGGAAACAAGGTAAACCAAGATTGAAGCCGCCTTTCCCAGCCAATGCTGGGTTGTATGGATGTCCTACCACTGTCACAAATGTGGAAACTGTGGCTGTGTCTCCAACCATTCTAAGGCGTGGACCTGAATGGTTTGCCAGTTTTGGTAGGAAGAACAATGCTGGGACAAAGTTGTTTTGTGTGTCAGGGCATGTGAACAAGCCTTGCACTGTTGAGGAGGAAATGAGTATTCCACTGAAGGAATTGATAGAGAGGCACTGTGGAGGTATTCGAGGAGGATGGGATAATCTACTTGCAGTGATTCCAGGAGGATCATCCGTTCCTCTGATTCCAAAGCATGTATGTGATGATATCTTGATGGATTATGATGCATTGAAGGCTGTTGGGACAGGGTTGGGGACTGCAGCTGTAATTGTGATGGATAAATCTACGGATGTTGTGGATGCTATTGCAAGGCTTTCCTATTTCTACAAGCATGAAAGCTGTGGGCAGTGCACCCCATGCAGAGAGGGGACTGGTTGGCTTTGGACGATCATGGAAAGAATGAAAGTTGGGAATGCCAAGTTAGAAGAAATTGATATGCTTCAGGAGTTGACTAAACAAATTGAAGGGCATACAATTTGTGCCTTGGGTGATGCTGCTGCATGGCCAGTGCAGGGTCTTATCAAGCATTTCAGGCCTGAGCTTGAGAGAAGGATTAGAGAGCATGCAGAAAGGGAGCTTCTGCAGGCCACTGGCTAG
>Glyma10g00820.1 sequence type=predicted peptide gene model=Glyma10g00820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGILSVRTALVQHHSEKLGLGFRVFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVVKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLEKAREEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGIRGGWDNLLAVIPGGSSVPLIPKHVCDDILMDYDALKAVGTGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWTIMERMKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIKHFRPELERRIREHAERELLQATG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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