Glyma10g00660 - SoyBase

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Report for Sequence Feature Glyma10g00660

Feature Type:	gene_model
Chromosome:	Gm10
Start:	412827
stop:	422472
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43310	AT	Annotation by Michelle Graham. TAIR10: COP1-interacting protein-related \| chr5:17379735-17385387 REVERSE LENGTH=1180	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
UniRef100_G7I4V2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COP1-interacting protein n=1 Tax=Medicago truncatula RepID=G7I4V2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C216	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C216 related cluster n=1 Tax=unknown RepID=UPI000233C216	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g00660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g004100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g00660

Limit To All Plant Sequences

>Glyma10g00660.1   sequence type=CDS   gene model=Glyma10g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCTTCTACTAGGTTGGATTCAGCTGTGTTTCAGCTCACACCAACTAGAACCAGGTTTGACTTGTTTATAACTGTGAATGGAAAGAAGGAGAAAGTCGCGTCGGGTTTGCTCAAACCATTTCTATCCCACTTGAAGGCTGCTCAAGATCAAATAGCTAAGGGTGGTTATTCAATTGTTCTTGTGCCTGAGCATGGCAGTGACGCCTCATGGTTTACCAAGGGAACAATTGAAAGGTTTGTTCGCTTTGTTAGCACTCCTGAGGTATTGGAACGTGTGTATACTATAGAATCTGAAATTGCACAAATTGAAGAGGCAATTGCAATTCAAGGAAATAATTCTATAGGGATTAGCTTTGTGGAAGAATACCAAATAAAACATGTGGAAAGCATTGAAGGCAGGAAGACTCAGCAGGATACGAATGAGGAGAAAGCTATTATTCTTTACACGTCTGATACACTGCCACCTGAAACAAATGGAAGCACCAAATCGGAAGGAAACTCAAAAGTTCAGCTTTTGAAAGTCCTGGAGACACGTAAATCTTTGCTGCAGAAAGAGCAAGGAATGGCATTTGCACGTGCTGTTGCTGCGGGTTTTGACATCAACTACATGCCAGCTTTGATGTCATTTGCTGAATGCTTTGAAGCACCACGCTTGATGGATGCATGTAGAAATTTTATTTCTCTATGGAAAAGAAAGCATGAGAGTGGCCAATGGCTTGAAATTGAACCTGCTGAAGTGACACCCAATCGTGCTGACTTCTCTGCAATAAATGCATCAGGTGTCACACTTTCCAATGTGGTTACTACATCCCATACTGAAATGGACTCGGAAAGTAATGGGAAAACTAATTCAGATGTGTTTTCAATGGACAGACAACCAACTGCAGGCTACCAAGATAATGTTCAAGGTCATTTTCCAAATAATGGGTTCTCCTCTTGGCCTGTTCATTCTTCCCCAGGTGCTTTACCAATGTTTCAGCCATATCCAGTTCAAGGGATACCCTACTATCAGACTTATCCAGCAAACAGCCCATTTATGCAGCCAGTTTGTTCAACACCAATAGGACATAGAAGACATTCCATGGATAATGGACAGCTTACAGAATCTGAAATTCGGGACGAAATGGATATGGAGAGGGAGCGTTCACTGACTGGAGAACGACGGAAGAAGGCTGGCCGATCCAGCAGACAGAAATCTGGCATGGTGGTCATTCGGAACATCAATTACATAACGAAGACAGAACGATCTTTGGGCAGTGGGTCATGTTCAGATTATTCCTCTGAAAGTGATGGAGATAAAGTTTCTCATGAATCAGTTAAGACCTCAAAAAGAAGAGGATCCAGTGACAAATCTTTTAAAAGGTTGAATTCATCTGATAAGGAAGTAACAGACTCTGGGAAAGATGCTGATGAAGGACAGTGGCTAGCATTCCAAAATTGTTTACTGAGAGGAGTAGATGAAGATAGACGGGCCATTGACCAAGGCCAGTTTGATCAAGTGAGAAGAAAAAAACATGTTGCAGTCAATGATCCTATAGATTTTACTGAGCAGAATAGGCATGAAGCTCAAGGAGGTGGAGCCATAGATATGCATAGCATTAGAAAGGGATTGGCCTGCATGCCTAGGTCATCTAATGATGATTTCTTGTTATCTAGGTCAGGACAGTCTGTTAATGGTAATTTACATTCTTCCTCAGATGTGGCATCTGTCAATGGACAAGATTGTTCAAGCAATAAATTGGAAAGGAAGTTGTTTCATGATACGAACAATGACTCATATATAGTCAGAGTCAAAGATTCAGGAAATTTTGAGAGAAATGCTATTGACATGGACTCCGAGTTCCCTAAGGTGAATAGGAAGGAAGAAAAGACTTCCAATTATCAGCCAGATGAATTGAGTTTGATGCCTGAACGAGGAGCAGAAAAGGGGTCAGTGGGTTATGGCCCTGCCTTAGACTATGAAATGCAAGCTCAGGCTGGAAGTGGTGCTTTGCAAGATAAAAAGAACAAAGGTTTATTGGCTCACACCAAACCAAGATCTAAGATGTTGGATAAAAATCTAAAATCGAAATCTACTCCAAATAGTTCTGATGTAAAAAAGATTGTTGGGCCAATAAGGAGAGGAAAGACTAATAAACCAAGTCCATTGGATGAAGCAAGAGCACGTGCTGAAAGACTACGTAACTACAAAGCTGATCTCCAAAAACTGAAGAAAGAGAAGGAAGAGGAAGAGATAAAACGCCTCGATGCTTTAAAAATGGAGAGGCAAAACAGAATTGCTGCCAGGAGTAATTCAGTTGCTACCAAATCATCCACACCACCACAGAAAACCAAGAAACAGATTCCAATGAAATTTTCACCTAGCTCTTATAAAGGATCCAAATTTAGTGATTCAGAGCCGGGTTCATCCTCACCCTTCCCAAGATTTCCCATCAGAATTGCTTCTGTTGGATCCAGTGATTCTTCAAAAGCCCCGAAAACCAGCAGATTGAGTACTCTAAGCCACTCAGCTACAAACAAATTAAGCCGATCTGCACCTTCTCTGCCCGAATCTAAGCAAGAGAAGGGTGATGGTACATCTGATACTAAGGCATCGATGGCAAGACTTAGAAGATTGTCAGAACCTAAAATCAGTACCATTCGTCATACTTCCTCAGTCTCTGTTAAACCACGAGGTTCTAGGACAACTTCAGTGACTAAAGCAGCTAATGAAACTGAGATCAGAAAGATTTCTGCAATTGTGAATCATGATAAAAGCAAGACTGCGACCCTTCCCGAACTAAAAATTAAAACACCTAAAGCTAGCAACATTTTCCAAAATAAATCATCAATTAAAGAGAGGACACAGAGGCTAAATGTTAACAAATCTTCTATGAATTCTGAAGGTACTATGCTAAAGAAAAATGAATTTGGAATTTCACCTATAGATGATGAAGATGATAATCCTATAATTGAAAAGACTGTTGTAATGCTTGAGCGTGAAAAACCTTGTGCCCCCAATATTAAAAATGACAAGTCAAAAGAAAAAACAGGGATACCAAAGAGACAGTATGACAATGATAAAGTGAAGGAGAAACCTGAGACAGTGTCAAGTTATGTTGCTGTTCATGCCCCAGTTTCAGTAGATATGGAAACCTCGGAGAGCAAATCACATGTGCAACCCTTATCATCCAAGGTTAAAACAAATGATACAGGGAAAGAGCCTTCAAAATCATCTAGCATTCATATTACTGAGGAAACATATCATGCCCCGCATGCTCGAGTGTCTTCTTTGGAAGATCGTTGTTCACGAAACTCTGAGCATGGTAAAGCACCTACCACAAGCTTGGACAGTGCATCAATTGGTATGGAGACTTTTAGATCACTGGTGTCTGATTCCAGAAACTCAACACTTGAGAAGATTCCTGAAGTGATTGAGAAGCCTCGGGTAAAGGAATCATCTAAAGGGTTGAGACGGCTGTTAAAATTTGGAAGAAAGAATCACGACTCGCCTACTGCTGGACGCAACATGGAATCAGATAATACCAGTATTGATGGTTCTGAAGCAAATGAGATTGGAACTAATGGTTCCTCGAATGAAGTTCATACTCTGAAGAATTTGATCTCTCGTGATGATACTCTCACAACCAGTGCAACTCCTCCAAAGTCTTCTCGCTCTTTCTCCTTGTTATCGCCATTCCGAAGCAACAAAGGAAAAAAGATAACAATGGCCTGA

Predicted protein sequences of Glyma10g00660

Limit To All Plant Sequences

>Glyma10g00660.1   sequence type=predicted peptide   gene model=Glyma10g00660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSSTRLDSAVFQLTPTRTRFDLFITVNGKKEKVASGLLKPFLSHLKAAQDQIAKGGYSIVLVPEHGSDASWFTKGTIERFVRFVSTPEVLERVYTIESEIAQIEEAIAIQGNNSIGISFVEEYQIKHVESIEGRKTQQDTNEEKAIILYTSDTLPPETNGSTKSEGNSKVQLLKVLETRKSLLQKEQGMAFARAVAAGFDINYMPALMSFAECFEAPRLMDACRNFISLWKRKHESGQWLEIEPAEVTPNRADFSAINASGVTLSNVVTTSHTEMDSESNGKTNSDVFSMDRQPTAGYQDNVQGHFPNNGFSSWPVHSSPGALPMFQPYPVQGIPYYQTYPANSPFMQPVCSTPIGHRRHSMDNGQLTESEIRDEMDMERERSLTGERRKKAGRSSRQKSGMVVIRNINYITKTERSLGSGSCSDYSSESDGDKVSHESVKTSKRRGSSDKSFKRLNSSDKEVTDSGKDADEGQWLAFQNCLLRGVDEDRRAIDQGQFDQVRRKKHVAVNDPIDFTEQNRHEAQGGGAIDMHSIRKGLACMPRSSNDDFLLSRSGQSVNGNLHSSSDVASVNGQDCSSNKLERKLFHDTNNDSYIVRVKDSGNFERNAIDMDSEFPKVNRKEEKTSNYQPDELSLMPERGAEKGSVGYGPALDYEMQAQAGSGALQDKKNKGLLAHTKPRSKMLDKNLKSKSTPNSSDVKKIVGPIRRGKTNKPSPLDEARARAERLRNYKADLQKLKKEKEEEEIKRLDALKMERQNRIAARSNSVATKSSTPPQKTKKQIPMKFSPSSYKGSKFSDSEPGSSSPFPRFPIRIASVGSSDSSKAPKTSRLSTLSHSATNKLSRSAPSLPESKQEKGDGTSDTKASMARLRRLSEPKISTIRHTSSVSVKPRGSRTTSVTKAANETEIRKISAIVNHDKSKTATLPELKIKTPKASNIFQNKSSIKERTQRLNVNKSSMNSEGTMLKKNEFGISPIDDEDDNPIIEKTVVMLEREKPCAPNIKNDKSKEKTGIPKRQYDNDKVKEKPETVSSYVAVHAPVSVDMETSESKSHVQPLSSKVKTNDTGKEPSKSSSIHITEETYHAPHARVSSLEDRCSRNSEHGKAPTTSLDSASIGMETFRSLVSDSRNSTLEKIPEVIEKPRVKESSKGLRRLLKFGRKNHDSPTAGRNMESDNTSIDGSEANEIGTNGSSNEVHTLKNLISRDDTLTTSATPPKSSRSFSLLSPFRSNKGKKITMA*

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