Glyma10g00620 - SoyBase

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Report for Sequence Feature Glyma10g00620

Feature Type:	gene_model
Chromosome:	Gm10
Start:	373006
stop:	378316
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14746	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr4:8462720-8464326 REVERSE LENGTH=212	SoyBase	E_val: 1.00E-61	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
UniRef100_B6SSP0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neurogenic locus notch protein-like n=1 Tax=Zea mays RepID=B6SSP0_MAIZE	SoyBase	E_val: 2.00E-34	ISS
UniRef100_I1L7E9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7E9_SOYBN	SoyBase	E_val: 1.00E-134	ISS

Expression Patterns of Glyma10g00620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g00620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g003600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g00620

Limit To All Plant Sequences

>Glyma10g00620.3   sequence type=transcript   gene model=Glyma10g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAAGACTCAACTTCCAACGACCCACTGTGTCCACGCACTGCTTTTTTCCGTTGTAGACATGTAACCCATGTTGCACCATTAATTTGTATATTCAATAGTACTGCTAGTATGTTTCATTTTCACACTTGTCCACGATTCATTTAAATTCAAATACAAGTACCCATATATCTCAGCTTTGTTTGCTTTCTTTCTAGTGTAATCCCCTCCCTCCCATTCTCTTTTGACTTTCAAAAATGGCCTTTGCAAGTGTCATAGCCATTGTTGCATTTCTTCTTCTACAACCTCTTTCAACTACTTCTGACTTCCTTTCTCCTTTGCTTTCTCCCATCTTTGATGATGTCTGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTGTTTGAATGCGAGTGTCATCAGGGTTGGAAACAGAGTCTTTCCAATGATGATGATGAGTCAAGCTTGAAGTTTCTTCCTTGCATCGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGGCAACAAAGTCCAATGAGTCAATTTTTTATGCTTGCCACTGGGTTGATTGTGGAGGTGGCTCATGCAACAAGACATCCATGTTCTCCTATAATTGTGAATGTGATGCTGGCTATTACAATCTTCTAAATGTCACTGCCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCATGGGTTGCTCTGAACTTGGAATATCAATGACAAACTCATCTACTTCCACACCACCAGCTTTGAATGACAACATTAAGAATGAGGGTAGCGCGATTCTACAAGGAAGCTTTTTTTGGCTGGTCATGCTAATTATGTTTATGGCAAAGCTTCAATTACAATAGGATAATTGCTGGTTGATTTTAGCAGTATGTCATTTTATGCTATTAATTTGGCCAGGGAGTAATTAAGGCATCACATCAGGGTTTAATACATGTCAGTTTTAGTTACTATTTATATCTAGTACCATGATTTGTCCTTGTTTTCTTAATTCTCTTTATATAATTAGTCCAGAGAATATTAATGTGATGATTGAGGATGAAGACAGCATATAATGAATCACCTACGCTAGTGTTAAGAATAGTTTTTTTTTTTTCCTTTTTATGATAAGAATGAAAGACAATATCAAAGAATATATAATATTTATGTATTTAGTTTAATCAATTGAACTAGATGTTTTTAGTGTATTAAGTATAGTTTGATAATATGATTGGATCAACACTATACCTATCTAATTTCAAAGCCCAATTTTTCAACCATGACTTAACATCCAAGTTTTTCATCTGTGTACCAACCAATGTACTAGTTTTTCCAATGCCTTAAGTTTGTCAAAGAACTCACCTTCATTCACATTTCGCATCACTGTTATCTTTTAACACTCATCTTTTATTAGTAGGAATTGATACAAAATCAC

Coding sequences of Glyma10g00620

Limit To All Plant Sequences

>Glyma10g00620.2   sequence type=CDS   gene model=Glyma10g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTTGCAAGTGTCATAGCCATTGTTGCATTTCTTCTTCTACAACCTCTTTCAACTACTTCTGACTTCCTTTCTCCTTTGCTTTCTCCCATCTTTGATGATGTCTGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTGTTTGAATGCGAGTGTCATCAGGGTTGGAAACAGAGTCTTTCCAATGATGATGATGAGTCAAGCTTGAAGTTTCTTCCTTGCATCGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGGCAACAAAGTCCAATGAGTCAATTTTTTATGCTTGCCACTGGGTTGATTGTGGAGGTGGCTCATGCAACAAGACATCCATGTTCTCCTATAATTGTGAATGTGATGCTGGCTATTACAATCTTCTAAATGTCACTGCCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCATGGGTTGCTCTGAACTTGGAATATCAATGACAAACTCATCTACTTCCACACCACCAGCTTTGAATGACAACATTAAGAATGAGGGTAGCTCAATTCTACAAGGAAGTTCCCTTTGGTTGATCATGCTAATTATGTTCGTGGCAAAGCTCCATTTGCAAATAGGACAAGTTTTGAATGGTTTTAGCAGTATCTCATTTTATTGTATTAATTTATACTGGTGTTCATATAAATAA

>Glyma10g00620.3   sequence type=CDS   gene model=Glyma10g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTTGCAAGTGTCATAGCCATTGTTGCATTTCTTCTTCTACAACCTCTTTCAACTACTTCTGACTTCCTTTCTCCTTTGCTTTCTCCCATCTTTGATGATGTCTGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTGTTTGAATGCGAGTGTCATCAGGGTTGGAAACAGAGTCTTTCCAATGATGATGATGAGTCAAGCTTGAAGTTTCTTCCTTGCATCGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGGCAACAAAGTCCAATGAGTCAATTTTTTATGCTTGCCACTGGGTTGATTGTGGAGGTGGCTCATGCAACAAGACATCCATGTTCTCCTATAATTGTGAATGTGATGCTGGCTATTACAATCTTCTAAATGTCACTGCCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCATGGGTTGCTCTGAACTTGGAATATCAATGACAAACTCATCTACTTCCACACCACCAGCTTTGAATGACAACATTAAGAATGAGGGTAGCGCGATTCTACAAGGAAGCTTTTTTTGGCTGGTCATGCTAATTATGTTTATGGCAAAGCTTCAATTACAATAG

Predicted protein sequences of Glyma10g00620

Limit To All Plant Sequences

>Glyma10g00620.2   sequence type=predicted peptide   gene model=Glyma10g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFASVIAIVAFLLLQPLSTTSDFLSPLLSPIFDDVCKEVECGKGTCKPSKNSTFLFECECHQGWKQSLSNDDDESSLKFLPCIVPNCTLDYSCSKAPAPVQEKATKSNESIFYACHWVDCGGGSCNKTSMFSYNCECDAGYYNLLNVTAFPCFRECSLGMGCSELGISMTNSSTSTPPALNDNIKNEGSSILQGSSLWLIMLIMFVAKLHLQIGQVLNGFSSISFYCINLYWCSYK*

>Glyma10g00620.3   sequence type=predicted peptide   gene model=Glyma10g00620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFASVIAIVAFLLLQPLSTTSDFLSPLLSPIFDDVCKEVECGKGTCKPSKNSTFLFECECHQGWKQSLSNDDDESSLKFLPCIVPNCTLDYSCSKAPAPVQEKATKSNESIFYACHWVDCGGGSCNKTSMFSYNCECDAGYYNLLNVTAFPCFRECSLGMGCSELGISMTNSSTSTPPALNDNIKNEGSAILQGSFFWLVMLIMFMAKLQLQ*

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