SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14746 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE LENGTH=212 | SoyBase | E_val: 1.00E-61 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| UniRef100_B6SSP0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Neurogenic locus notch protein-like n=1 Tax=Zea mays RepID=B6SSP0_MAIZE | SoyBase | E_val: 2.00E-34 | ISS |
| UniRef100_I1L7E9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7E9_SOYBN | SoyBase | E_val: 1.00E-134 | ISS |
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Glyma10g00620 not represented in the dataset |
Glyma10g00620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g003600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g00620.3 sequence type=transcript gene model=Glyma10g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCAAAGACTCAACTTCCAACGACCCACTGTGTCCACGCACTGCTTTTTTCCGTTGTAGACATGTAACCCATGTTGCACCATTAATTTGTATATTCAATAGTACTGCTAGTATGTTTCATTTTCACACTTGTCCACGATTCATTTAAATTCAAATACAAGTACCCATATATCTCAGCTTTGTTTGCTTTCTTTCTAGTGTAATCCCCTCCCTCCCATTCTCTTTTGACTTTCAAAAATGGCCTTTGCAAGTGTCATAGCCATTGTTGCATTTCTTCTTCTACAACCTCTTTCAACTACTTCTGACTTCCTTTCTCCTTTGCTTTCTCCCATCTTTGATGATGTCTGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTGTTTGAATGCGAGTGTCATCAGGGTTGGAAACAGAGTCTTTCCAATGATGATGATGAGTCAAGCTTGAAGTTTCTTCCTTGCATCGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGGCAACAAAGTCCAATGAGTCAATTTTTTATGCTTGCCACTGGGTTGATTGTGGAGGTGGCTCATGCAACAAGACATCCATGTTCTCCTATAATTGTGAATGTGATGCTGGCTATTACAATCTTCTAAATGTCACTGCCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCATGGGTTGCTCTGAACTTGGAATATCAATGACAAACTCATCTACTTCCACACCACCAGCTTTGAATGACAACATTAAGAATGAGGGTAGCGCGATTCTACAAGGAAGCTTTTTTTGGCTGGTCATGCTAATTATGTTTATGGCAAAGCTTCAATTACAATAGGATAATTGCTGGTTGATTTTAGCAGTATGTCATTTTATGCTATTAATTTGGCCAGGGAGTAATTAAGGCATCACATCAGGGTTTAATACATGTCAGTTTTAGTTACTATTTATATCTAGTACCATGATTTGTCCTTGTTTTCTTAATTCTCTTTATATAATTAGTCCAGAGAATATTAATGTGATGATTGAGGATGAAGACAGCATATAATGAATCACCTACGCTAGTGTTAAGAATAGTTTTTTTTTTTTCCTTTTTATGATAAGAATGAAAGACAATATCAAAGAATATATAATATTTATGTATTTAGTTTAATCAATTGAACTAGATGTTTTTAGTGTATTAAGTATAGTTTGATAATATGATTGGATCAACACTATACCTATCTAATTTCAAAGCCCAATTTTTCAACCATGACTTAACATCCAAGTTTTTCATCTGTGTACCAACCAATGTACTAGTTTTTCCAATGCCTTAAGTTTGTCAAAGAACTCACCTTCATTCACATTTCGCATCACTGTTATCTTTTAACACTCATCTTTTATTAGTAGGAATTGATACAAAATCAC
>Glyma10g00620.2 sequence type=CDS gene model=Glyma10g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTTTGCAAGTGTCATAGCCATTGTTGCATTTCTTCTTCTACAACCTCTTTCAACTACTTCTGACTTCCTTTCTCCTTTGCTTTCTCCCATCTTTGATGATGTCTGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTGTTTGAATGCGAGTGTCATCAGGGTTGGAAACAGAGTCTTTCCAATGATGATGATGAGTCAAGCTTGAAGTTTCTTCCTTGCATCGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGGCAACAAAGTCCAATGAGTCAATTTTTTATGCTTGCCACTGGGTTGATTGTGGAGGTGGCTCATGCAACAAGACATCCATGTTCTCCTATAATTGTGAATGTGATGCTGGCTATTACAATCTTCTAAATGTCACTGCCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCATGGGTTGCTCTGAACTTGGAATATCAATGACAAACTCATCTACTTCCACACCACCAGCTTTGAATGACAACATTAAGAATGAGGGTAGCTCAATTCTACAAGGAAGTTCCCTTTGGTTGATCATGCTAATTATGTTCGTGGCAAAGCTCCATTTGCAAATAGGACAAGTTTTGAATGGTTTTAGCAGTATCTCATTTTATTGTATTAATTTATACTGGTGTTCATATAAATAA >Glyma10g00620.3 sequence type=CDS gene model=Glyma10g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTTTGCAAGTGTCATAGCCATTGTTGCATTTCTTCTTCTACAACCTCTTTCAACTACTTCTGACTTCCTTTCTCCTTTGCTTTCTCCCATCTTTGATGATGTCTGCAAAGAAGTGGAATGTGGAAAAGGAACATGTAAACCTTCCAAGAACAGCACTTTCTTGTTTGAATGCGAGTGTCATCAGGGTTGGAAACAGAGTCTTTCCAATGATGATGATGAGTCAAGCTTGAAGTTTCTTCCTTGCATCGTTCCCAATTGTACATTGGACTACTCTTGCTCCAAAGCCCCTGCCCCTGTTCAAGAAAAGGCAACAAAGTCCAATGAGTCAATTTTTTATGCTTGCCACTGGGTTGATTGTGGAGGTGGCTCATGCAACAAGACATCCATGTTCTCCTATAATTGTGAATGTGATGCTGGCTATTACAATCTTCTAAATGTCACTGCCTTCCCTTGCTTCAGAGAATGTTCTCTTGGCATGGGTTGCTCTGAACTTGGAATATCAATGACAAACTCATCTACTTCCACACCACCAGCTTTGAATGACAACATTAAGAATGAGGGTAGCGCGATTCTACAAGGAAGCTTTTTTTGGCTGGTCATGCTAATTATGTTTATGGCAAAGCTTCAATTACAATAG
>Glyma10g00620.2 sequence type=predicted peptide gene model=Glyma10g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFASVIAIVAFLLLQPLSTTSDFLSPLLSPIFDDVCKEVECGKGTCKPSKNSTFLFECECHQGWKQSLSNDDDESSLKFLPCIVPNCTLDYSCSKAPAPVQEKATKSNESIFYACHWVDCGGGSCNKTSMFSYNCECDAGYYNLLNVTAFPCFRECSLGMGCSELGISMTNSSTSTPPALNDNIKNEGSSILQGSSLWLIMLIMFVAKLHLQIGQVLNGFSSISFYCINLYWCSYK* >Glyma10g00620.3 sequence type=predicted peptide gene model=Glyma10g00620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAFASVIAIVAFLLLQPLSTTSDFLSPLLSPIFDDVCKEVECGKGTCKPSKNSTFLFECECHQGWKQSLSNDDDESSLKFLPCIVPNCTLDYSCSKAPAPVQEKATKSNESIFYACHWVDCGGGSCNKTSMFSYNCECDAGYYNLLNVTAFPCFRECSLGMGCSELGISMTNSSTSTPPALNDNIKNEGSAILQGSFFWLVMLIMFMAKLQLQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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