Glyma10g00600 - SoyBase

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Report for Sequence Feature Glyma10g00600

Feature Type:	gene_model
Chromosome:	Gm10
Start:	335589
stop:	340855
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22810	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region \| chr3:8068595-8071559 FORWARD LENGTH=472	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005543	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipid binding	SoyBase	N/A	ISS
GO:0035091	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding	SoyBase	N/A	ISS
PTHR24730	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24730:SF7	Panther		JGI		ISS
PF05703	PFAM	Plant protein of unknown function (DUF828)	JGI		ISS
PF08458	PFAM	Plant pleckstrin homology-like region	JGI		ISS
UniRef100_B9RTK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ice binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTK7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L7E5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7E5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g00600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g003400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g00600

Limit To All Plant Sequences

>Glyma10g00600.2   sequence type=transcript   gene model=Glyma10g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAAACTTGTAATTTATGAAGAAAGTGTGGTAGGGAATAGTACTTGATAGGGAGGAATGGCATCGAGCAACAAGAGCCGTGGATGAAATCCCGACAAAGATCGACGGTGCTAAAATCTCTCCATGTTCTTTTAATAGAACTCCCTCTCACACATTCATTCAATAAAATCAAAACCTCTTCAATTTCATCTTTCTTCACCCGAAAATGGAAAAGGAGCGACCCGCATCATGGAGACCCGACCCGTTTCACGCACGGCCGCCGCCGCGCGACCCCATGGAGTTCCTGTCCCGGTCATGGAGCGCCTCCGCCCTCGAAGTTTCCAAGGCACTGTCGTCTCAACAGCTTCCACCTTCATCCAACAACAACGTTGTTTGTTATGTTAATAATTCTAATGCGTCTATAATACTCGAAGACATAGCTGGTGAAGTGGAAGAGTCTGCTGCAACTGTTTCTGGCAACCCTTTCTCCTTCGCTTCCTCTGAAACCTCTCAGATGATCATGGACCGCATCATGTCCCACTCCGAGGTATCACCACGCACCTCAGGAAGACTCTCTCACAGCAGTGGCCCTCTTAATGGCTCCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAGTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTGAATGGTCAATACTGGGGTGCCGGCGGCGCAGCTGCGGCCGCCGCCGCCGGAGGTGGCAAGACGGTGGGGAGGTGGCTGAAGGATAGGAAGGAAAAGAAGAAGGAGGAAACCAGGGCCCACAATGCTCAGCTTCACGCGGCGGTTTCCGTTGCCGGTGTTGCCGCCGCGGTGGCCGCCATCGCCGCCGCCACGGCCGCCTCGTCGGGCTCCAGGAAGGACGCGCAGATGGCGAAGACCGACATGGCGGTGGCGTCGGCGGCGACGCTGGTGGCGGCCCAGTGTGTGGAGGCTGCCGAGGCCATGGGAGCCGAGCGCGACCACCTGGCCTCGGTGGTAAGCTCCGCCGTGAACGTGAGGTCTGCCGGCGACATCACGACGTTGACGGCAGCTGCCGCCACAGCTTTACGTGGGGCTGCCACGTTGAAAGCAAGGGTGCTTAAGGAGGTTTGGAACATAGCAGCTGTGATTCCCGTGGAGAAGAATTTGGGTGCTGGCGGTGGCAGCAATGCTAATGGTAATAGAAATGGTAGCAATGATAGTTCTAATAGTAGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACTCGCACCGGTGAACTGCATTGGAAAATTGTATCCGTTTACATAAACAGGATGAATCAGGTTATGGTGAAGATGAAGAGCAGGCACGTTGCTGGGACCATCACAAAAAAGAAAAAGAATGTGGTGCTTGGAGTGATCAAAGATATGCCTGCTTGGCCTGGACGCCACTTGCTTGAAGGTGGTGAGAACCGTCGCTACTTTGGTTTGAAAACAGTGATGCGTGGTGTTGTGGAATTTGAGTGCAGAAATCAAAGAGAGTATGATGTATGGACTCAAGGTGTGTCAAGGCTTCTATCTATTGCTGCCGAGAGGAGCAACAGAAACCGAATATAGTGAAAAATTATTGAGGAGATGGTAGTAGTTAAGTATGATAAGATATAATTAATCAATGAACATGGTAGTAGATCTTTTGATACATGGTGGGGTGGGGTTTTAATCCAAATGTAAAAAAGGGTAAATTAAATTGAAGTTCTTCTAGTTGTGCCATATGGGGGTTTTCTTTTCTTTCTTTTTAATCTTGGGGGACACACATGGATATTTTTATGTATTTTTTGGAATGTGAAAGTAAAGTCATTTGAGCCAAAGTGAGTGAAAAATCATGTGAACCTTGGTGTTGTTCTTTCTTTTGCTGATTTGGAAAGGAAAAGTAGTATGTGTGTTGGACCGGGGCAGTCAAAAGAGAAAAAAGAATGAGTGAAGTGTAGTATTGAAGATAAAGACAAAGAAAGGGTAGTGATCTATGTGCTTTTGTTTATACATGTTGATTTAGGCTTTCCCTGATTGGATCCCAAGAAGTAGTTTAAGGTTTATGAGCTAGAGCCATCATTGTTTTGGATTATATTCTTTCACTTTGCGTATTTTGTTTGTTTAAAG

Coding sequences of Glyma10g00600

Limit To All Plant Sequences

>Glyma10g00600.1   sequence type=CDS   gene model=Glyma10g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAGCGACCCGCATCATGGAGACCCGACCCGTTTCACGCACGGCCGCCGCCGCGCGACCCCATGGAGTTCCTGTCCCGGTCATGGAGCGCCTCCGCCCTCGAAGTTTCCAAGGCACTGTCGTCTCAACAGCTTCCACCTTCATCCAACAACAACGTTGTTTGTTATGTTAATAATTCTAATGCGTCTATAATACTCGAAGACATAGCTGGTGAAGTGGAAGAGTCTGCTGCAACTGTTTCTGGCAACCCTTTCTCCTTCGCTTCCTCTGAAACCTCTCAGATGATCATGGACCGCATCATGTCCCACTCCCAGGAGGTATCACCACGCACCTCAGGAAGACTCTCTCACAGCAGTGGCCCTCTTAATGGCTCCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAGTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTGAATGGTCAATACTGGGGTGCCGGCGGCGCAGCTGCGGCCGCCGCCGCCGGAGGTGGCAAGACGGTGGGGAGGTGGCTGAAGGATAGGAAGGAAAAGAAGAAGGAGGAAACCAGGGCCCACAATGCTCAGCTTCACGCGGCGGTTTCCGTTGCCGGTGTTGCCGCCGCGGTGGCCGCCATCGCCGCCGCCACGGCCGCCTCGTCGGGCTCCAGGAAGGACGCGCAGATGGCGAAGACCGACATGGCGGTGGCGTCGGCGGCGACGCTGGTGGCGGCCCAGTGTGTGGAGGCTGCCGAGGCCATGGGAGCCGAGCGCGACCACCTGGCCTCGGTGGTAAGCTCCGCCGTGAACGTGAGGTCTGCCGGCGACATCACGACGTTGACGGCAGCTGCCGCCACAGCTTTACGTGGGGCTGCCACGTTGAAAGCAAGGGTGCTTAAGGAGGTTTGGAACATAGCAGCTGTGATTCCCGTGGAGAAGAATTTGGGTGCTGGCGGTGGCAGCAATGCTAATGGTAATAGAAATGGTAGCAATGATAGTTCTAATAGTAGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACTCGCACCGGTGAACTGCATTGGAAAATTGTATCCGTTTACATAAACAGGATGAATCAGGTTATGGTGAAGATGAAGAGCAGGCACGTTGCTGGGACCATCACAAAAAAGAAAAAGAATGTGGTGCTTGGAGTGATCAAAGATATGCCTGCTTGGCCTGGACGCCACTTGCTTGAAGGTGGTGAGAACCGTCGCTACTTTGGTTTGAAAACAGTGATGCGTGGTGTTGTGGAATTTGAGTGCAGAAATCAAAGAGAGTATGATGTATGGACTCAAGGTGTGTCAAGGCTTCTATCTATTGCTGCCGAGAGGAGCAACAGAAACCGAATATAG

>Glyma10g00600.2   sequence type=CDS   gene model=Glyma10g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGGAGCGACCCGCATCATGGAGACCCGACCCGTTTCACGCACGGCCGCCGCCGCGCGACCCCATGGAGTTCCTGTCCCGGTCATGGAGCGCCTCCGCCCTCGAAGTTTCCAAGGCACTGTCGTCTCAACAGCTTCCACCTTCATCCAACAACAACGTTGTTTGTTATGTTAATAATTCTAATGCGTCTATAATACTCGAAGACATAGCTGGTGAAGTGGAAGAGTCTGCTGCAACTGTTTCTGGCAACCCTTTCTCCTTCGCTTCCTCTGAAACCTCTCAGATGATCATGGACCGCATCATGTCCCACTCCGAGGTATCACCACGCACCTCAGGAAGACTCTCTCACAGCAGTGGCCCTCTTAATGGCTCCCTAACAGATAGCCCTCCGGTTTCTCCTTCTGAAATTGACGATTTCAAGTATAACCGTTCCAACAACAACCACAACACTGTCAACATGATTACCGGCTTGAATGGTCAATACTGGGGTGCCGGCGGCGCAGCTGCGGCCGCCGCCGCCGGAGGTGGCAAGACGGTGGGGAGGTGGCTGAAGGATAGGAAGGAAAAGAAGAAGGAGGAAACCAGGGCCCACAATGCTCAGCTTCACGCGGCGGTTTCCGTTGCCGGTGTTGCCGCCGCGGTGGCCGCCATCGCCGCCGCCACGGCCGCCTCGTCGGGCTCCAGGAAGGACGCGCAGATGGCGAAGACCGACATGGCGGTGGCGTCGGCGGCGACGCTGGTGGCGGCCCAGTGTGTGGAGGCTGCCGAGGCCATGGGAGCCGAGCGCGACCACCTGGCCTCGGTGGTAAGCTCCGCCGTGAACGTGAGGTCTGCCGGCGACATCACGACGTTGACGGCAGCTGCCGCCACAGCTTTACGTGGGGCTGCCACGTTGAAAGCAAGGGTGCTTAAGGAGGTTTGGAACATAGCAGCTGTGATTCCCGTGGAGAAGAATTTGGGTGCTGGCGGTGGCAGCAATGCTAATGGTAATAGAAATGGTAGCAATGATAGTTCTAATAGTAGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACTCGCACCGGTGAACTGCATTGGAAAATTGTATCCGTTTACATAAACAGGATGAATCAGGTTATGGTGAAGATGAAGAGCAGGCACGTTGCTGGGACCATCACAAAAAAGAAAAAGAATGTGGTGCTTGGAGTGATCAAAGATATGCCTGCTTGGCCTGGACGCCACTTGCTTGAAGGTGGTGAGAACCGTCGCTACTTTGGTTTGAAAACAGTGATGCGTGGTGTTGTGGAATTTGAGTGCAGAAATCAAAGAGAGTATGATGTATGGACTCAAGGTGTGTCAAGGCTTCTATCTATTGCTGCCGAGAGGAGCAACAGAAACCGAATATAG

Predicted protein sequences of Glyma10g00600

Limit To All Plant Sequences

>Glyma10g00600.1   sequence type=predicted peptide   gene model=Glyma10g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKERPASWRPDPFHARPPPRDPMEFLSRSWSASALEVSKALSSQQLPPSSNNNVVCYVNNSNASIILEDIAGEVEESAATVSGNPFSFASSETSQMIMDRIMSHSQEVSPRTSGRLSHSSGPLNGSLTDSPPVSPSEIDDFKYNRSNNNHNTVNMITGLNGQYWGAGGAAAAAAAGGGKTVGRWLKDRKEKKKEETRAHNAQLHAAVSVAGVAAAVAAIAAATAASSGSRKDAQMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSAGDITTLTAAAATALRGAATLKARVLKEVWNIAAVIPVEKNLGAGGGSNANGNRNGSNDSSNSSFSGEIVPEENFLGICSRELLARGCELLKRTRTGELHWKIVSVYINRMNQVMVKMKSRHVAGTITKKKKNVVLGVIKDMPAWPGRHLLEGGENRRYFGLKTVMRGVVEFECRNQREYDVWTQGVSRLLSIAAERSNRNRI*

>Glyma10g00600.2   sequence type=predicted peptide   gene model=Glyma10g00600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKERPASWRPDPFHARPPPRDPMEFLSRSWSASALEVSKALSSQQLPPSSNNNVVCYVNNSNASIILEDIAGEVEESAATVSGNPFSFASSETSQMIMDRIMSHSEVSPRTSGRLSHSSGPLNGSLTDSPPVSPSEIDDFKYNRSNNNHNTVNMITGLNGQYWGAGGAAAAAAAGGGKTVGRWLKDRKEKKKEETRAHNAQLHAAVSVAGVAAAVAAIAAATAASSGSRKDAQMAKTDMAVASAATLVAAQCVEAAEAMGAERDHLASVVSSAVNVRSAGDITTLTAAAATALRGAATLKARVLKEVWNIAAVIPVEKNLGAGGGSNANGNRNGSNDSSNSSFSGEIVPEENFLGICSRELLARGCELLKRTRTGELHWKIVSVYINRMNQVMVKMKSRHVAGTITKKKKNVVLGVIKDMPAWPGRHLLEGGENRRYFGLKTVMRGVVEFECRNQREYDVWTQGVSRLLSIAAERSNRNRI*

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