Report for Sequence Feature Glyma10g00580
Feature Type: gene_model
Chromosome: Gm10
Start: 330987
stop: 331869
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g00580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G17570 AT
Annotation by Michelle Graham. TAIR10: Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295
SoyBase E_val: 3.00E-69 ISS
GO:0016765 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups
SoyBase N/A ISS
KOG1602
KOG
Cis-prenyltransferase
JGI ISS
PTHR10291 Panther
UNDECAPRENYL PYROPHOSPHATE SYNTHETASE
JGI ISS
PF01255 PFAM
Putative undecaprenyl diphosphate synthase
JGI ISS
UniRef100_G7L9D4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Undecaprenyl pyrophosphate synthetase n=1 Tax=Medicago truncatula RepID=G7L9D4_MEDTR
SoyBase E_val: 5.00E-114 ISS
UniRef100_I1L7E4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7E4_SOYBN
SoyBase E_val: 4.00E-165 ISS
Expression Patterns of Glyma10g00580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma10g00580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g003300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g00580
Coding sequences of Glyma10g00580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g00580.1 sequence type=CDS gene model=Glyma10g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTTGCCATTTTATCTATGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATACTTAGATACTGTTATGAATTGGGAGTGAAGAGGCCTAAAGAGGTTCAGTCCTTGATGGAATTGATGCGAGAAAAGATTGAGGAGTTGCTTAAACAAGAAAGCCTTATTAATGAATATGGTGTTAGATTACATTTCATTGGAGACATGCAACTATTGACTGAGCCTGTCCGGGTTGCTTTGGAAAAAGCAATGAGAGTTACTGCCCACAACAACCAGAGAGTTCTTTTGATTTGTGTAGCCTATACTTCTCGTCATGAGATTGTGCATGCTGTTCAAGAATTCTATTCATGTAAAGACTATCTAAATGCAACCAAAGCTTGTAGTAGTGTACCTAACAGAGTGGAAGGTGCCGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAACATAGCGGTAACAATAGTGAAGCTGAAATCACATCATGCAATGAGATGGTTGAAATGACTGAAGAGGGTGAGGTTCCTTTTGTAAAACTGGTTGATATTGAGAAGAACATGTACATGGCAGTGGCACCTGACCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCAGACTCAGCAATTTTCTTCTATGGCAGACTAG
Predicted protein sequences of Glyma10g00580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g00580.1 sequence type=predicted peptide gene model=Glyma10g00580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFAILSMGPVPSHIAFIMDGNRRYAKKRNMEEGDGHKAGFTALMSILRYCYELGVKRPKEVQSLMELMREKIEELLKQESLINEYGVRLHFIGDMQLLTEPVRVALEKAMRVTAHNNQRVLLICVAYTSRHEIVHAVQEFYSCKDYLNATKACSSVPNRVEGAGEKDGMLEHTVEKHSGNNSEAEITSCNEMVEMTEEGEVPFVKLVDIEKNMYMAVAPDPDILIRTSGEAQTQQFSSMAD*