Report for Sequence Feature Glyma10g00550
Feature Type: gene_model
Chromosome: Gm10
Start: 307660
stop: 315119
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g00550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G04200 AT
Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732
SoyBase E_val: 0 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0008284 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2225
KOG
Proteins containing regions of low-complexity
JGI ISS
PTHR12895 Panther
FAMILY NOT NAMED
JGI ISS
PTHR12895:SF1 Panther
gb def: hypothetical protein f20d22.3 - arabidopsis thaliana
JGI ISS
PF09742 PFAM
Dyggve-Melchior-Clausen syndrome protein
JGI ISS
UniRef100_I1L7E1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7E1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O64487 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F20D22.3 protein n=1 Tax=Arabidopsis thaliana RepID=O64487_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g00550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma10g00550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g003000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g00550
Coding sequences of Glyma10g00550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g00550.1 sequence type=CDS gene model=Glyma10g00550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCGGCGCTGTCAACGCCGGACACGGCGGAGCATCTCGTCGGAAGCTTCGTCGGCGACGTGTCCATCCCTCTCTCCTCTGACTTCTGGCAGAAGCTTCTCGAGCTTCCTTTCGATGCCGAATTGCCCTCCCAGCGCCTTCACCAAGCTTGCCAGTTATTGGTGCAAAACAACCGTAATACGAGGCATCTTGCCAAGATTTTGTTCCATCTAGCATGCTACTTGCAGGAGTCCATTTCTACTTCTGGTGTGCTGCAGCTGGTTTATGAAAAGGCTGTTAATGCAGTTTACTTGACTTCAGTGTTCCTAAAACACTTGATTGAAAGTGCTCAAGATGGTGATGTCGAGTTATACCTGTCTCTCCATGATAGTGAATCAATACCAAAAAATATTTTGAGAGATCAGACCATTGAAAATCTTGTCATGCGGAATGTGCTCAACTTTATTGCATCTGTAGATGTGAGCCCCAACACATATTTCCTACATCTGGAGCTGCTTAATTTTATGATTATTGCAATCTCAACTCAGCTTCTTTGTGGGCCATCTCCTGGACCGAATGATGTGAACCCATTTCTTGATGCAGCGATGGCTCAGGATAGCCATCTGGTTACTTCAGTTGTGTGCAACCTGCTTCTAAATTACATTACCCGTCCTCGTGTTCCATTTAATAGAGCATCTTATTCCATCTTTTATGATCGAAGTCAGAATAGTGTGCTAAAGAGAGTTGGTTCTGCAGCTGCAAATATTGTGTTATTGCCATTCAGTTATTTGATCAGTTCAAGCAGTGAAGGTTCAAGAAATCCAATAGCAGATAGCAGTCTTCAAGTGCTTCTTGTTCTCATTCATTATCATAAATGTCTTGTGAGTGAGGGCTACTCTGTCCTAAAGAATCAAGTATCTGCCTCTTCAGATTCTTCACCAAAAGATAATACATATTTTTCTGACAACCCTTACTGCAGGGCCTTAGAGCGTGCAATTGATTGTGAATTGGATTGTGTAGATAAAGAGGGTAATGCACACAGTGACCAGCATGTAAAATTGCCTTTTGCACCGTTGTTTGATACCCTTGGCATGTGCTTAGCTGATGAGACAGCTGTCCTACTTCTTTACTCATTTTTGCAAGGGAATTCCACCTTTCTGGAGTATGTCTTAGTCCGGACTGATTTGGATACATTGTTAATGCCAATTCTAGAAGCATTATATGATGCTCGAAGGATGACAGCTTATCAAATTTACATGTTGTTAATTATACTTCTCATACTTAGTCAAGATACTTCTTTCAATGCAGGAATTCATAAGCTGATATTGCCAACTGTTCCATGGTACAAAGAACGTCTCCTCTATCAGTCTTCTCTTGGTTCCCTCATGGTCATCATTCTTATCAGAACTATACAGTATAATTTGTCTAAACTTCGGGATGTATATCTTCATACAACATGTCTGGCAACATTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCTCAGAGACTAGTCAGCCTCTTTGACATGCTATCACGAAAGTATAACAAATTAGCTGATCTCAGAGATGGTAAGCTCAATATTGCAGAAAACAACTCAATTGAAAGAAGTAGCCTTGTAGAAGATATGTCAGCAGAGTTGCAGATATATACTGACTTCTTGAGGCTTGTACTAGAAATTATAAATGCAATTCTGACTTATGTACTGCCTCAAAATCCTGAGGTGGTGTATGCAATAATGCACAAGCAGGAAGTCTTTCAGCCTTTCAAGAATCACCCCCGTTTCGATGAGCTTGTTGAAAACATCTACACTGTGTTAGATTTTTTTAATAGTCGCATGGATGCCCAAAGAATGAATGGTGATTGGTCTGTCAATTTAGTGCTCCAAGTGATAATTATGAACTGTCGGTCTTGGCATGCTGATGGGATGAAGATGTTTACTCAACTTCATTTCACATATGAACAAGAGAGTCACCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTACTATCCAGATGTGGATTTGAATTCAATGCAGGAGCTATACATTTGTTTCCTGCTGATCTACCTACCAAAAAACTTGACAATGGGGTGGTGAGAAATACATTCCAAAATGATGACTTTGACTAG
Predicted protein sequences of Glyma10g00550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g00550.1 sequence type=predicted peptide gene model=Glyma10g00550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSALSTPDTAEHLVGSFVGDVSIPLSSDFWQKLLELPFDAELPSQRLHQACQLLVQNNRNTRHLAKILFHLACYLQESISTSGVLQLVYEKAVNAVYLTSVFLKHLIESAQDGDVELYLSLHDSESIPKNILRDQTIENLVMRNVLNFIASVDVSPNTYFLHLELLNFMIIAISTQLLCGPSPGPNDVNPFLDAAMAQDSHLVTSVVCNLLLNYITRPRVPFNRASYSIFYDRSQNSVLKRVGSAAANIVLLPFSYLISSSSEGSRNPIADSSLQVLLVLIHYHKCLVSEGYSVLKNQVSASSDSSPKDNTYFSDNPYCRALERAIDCELDCVDKEGNAHSDQHVKLPFAPLFDTLGMCLADETAVLLLYSFLQGNSTFLEYVLVRTDLDTLLMPILEALYDARRMTAYQIYMLLIILLILSQDTSFNAGIHKLILPTVPWYKERLLYQSSLGSLMVIILIRTIQYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFDMLSRKYNKLADLRDGKLNIAENNSIERSSLVEDMSAELQIYTDFLRLVLEIINAILTYVLPQNPEVVYAIMHKQEVFQPFKNHPRFDELVENIYTVLDFFNSRMDAQRMNGDWSVNLVLQVIIMNCRSWHADGMKMFTQLHFTYEQESHPEEFFIPYVWQLVLSRCGFEFNAGAIHLFPADLPTKKLDNGVVRNTFQNDDFD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
