Glyma10g00534 - SoyBase

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Report for Sequence Feature Glyma10g00534

Feature Type:	gene_model
Chromosome:	Gm10
Start:	301933
stop:	303669
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00534

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62670	AT	Annotation by Michelle Graham. TAIR10: rna processing factor 2 \| chr1:23204773-23206665 REVERSE LENGTH=630	SoyBase	E_val: 2.00E-109	ISS
GO:0000966	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA 5'-end processing	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KQ86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7KQ86_MEDTR	SoyBase	E_val: 2.00E-143	ISS
UniRef100_I1L7E0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7E0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00534

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g00534 not represented in the dataset	Glyma10g00534 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00534

Paralog	Evidence	Comments
Glyma02g00531	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00534 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g002800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00534

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g00534

Limit To All Plant Sequences

>Glyma10g00534.1   sequence type=CDS   gene model=Glyma10g00534   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTCCTGAAACTTCCTCGCCTTCTTATGCCATACGTGAGGAGGATACATCTTCATTCGCAGCCATTGCCGTCACAAAGCACCTGCAAATTTGACAGTATTGATGATGCTGTGGCTTTGTTTCACCGCATGGTCGATATGCATCCCCTGCCATCGATTGTAGAATTCACCAAAATCTTGGGAACGATTGCGAAGATGAGATACTATGCCACAGCTATTGATCTTTATACCCTAATGGAATATAAGGGTGTTGTGCCGTTTACAGTTACTTTTAACATCTTGATCAACTGTTTCTGCCACATGGGTCAGATGGATTTTGCTTTCTCTGTAATGGGTAAGATTCTTAAGTGGGGTTGTCGACCAAATGTTGTGACTTTTACTACGCTGATGAAGGGGTTCTGTGTTAATGATAAAATGCTGGATGCACTATACATATATGATGAAATGGTTGCACGAAGGATTCGGTTTGACGATGTTCTGTATGGAACCTTAATCAATGGGCTGTGTAAGAGTAAGATAGGAAAACCAAGAGCTGCCGTTCAACTGCTTCAAAAAATGGAGGAGAGACAGTTGGTTAAGCCCAATCTTATAATGTACAATACAGTTGTCCATGGTTTGTGCAAAGATGGAAATATAAATGAGGCACGTGTTTTGTGTTCTAAAATGATTGTTCAGGGAATTTTCCCTGACATTTTCACTTATAGTTCATTAATTTATGGTTTGTGTCGTGCAGGCCAACGGAAAGAAGTTACATCATTGCTGAATGGGTTTTGTTTAAACAATAAAGTGGATGAGGCAAGAGAATTATTTAATGTGATGATTGAAAGAGGTGAACAGCATGACATCATTAATTACAATATTTTGATGAATGGATATTGTTTAAACAATAAAGTGGGTGAGGCAAGAAAATTATTTCATATGATGGTTGAAAGAGGTGAACAACCTGACACTATTACTTACACTATTTTGATGCATGGATATTGTTTAATTGATAAAGTGGACGAGGCAAGAAATTTATTTCATGGGATGATTGAAAGGGGTTTGGTGCCTGATGTTTGGAGCTATAACATCTTGATTAAAGGTTATTGCAAGTTTGAAAGAGTGGGTGAAGCTATGAATTTACTTGAAGATATGTTTCTTAAGAATTTAGTTCCAAACATTATAACTTACAATTCTGTAGTTGACGGTTTATGCAAATCTGGAGGAATCTTGGATGCATGGAAGCTTGTTGATGAAATGCATTACTGTTGTCAACCACCTCCAGATGTAACCACTTACAATATCTTGTTAGAGTCTCTATGTAGAATTGAGTGTGTTGAAAAGGCAATTGCATTTTTTAAACACCTCATCTTTGAAAGAAGTTTTGCACCTAATGTTTGGAGTTACAACATCTTGATTAGTGGTTGTTGCAAGAATAGAAGATTGGATGAAGCCATTAATCTTTTTAATCATATGTGTTTCAAGAATTTGGTTCCAGATATTGTAACCTACAATATCTTGTTAGATGCTTTATTCAATGGGCAGCAACTTGACAAGGCAATTGCATTATTAGTCCAAATTGTTGATCAAGGTATTAGTCCAAATTTGCGAACATACAATATACTTATTAATGGGTTGCACAAAGGGGGGAGGCCAAAGACTGCACAGAAGATTTCCCTGTATCTTTCCATTAGAGGTTACCATCCAGATGTCAAAACATATATAATCAATGAGCTTTGTAAAGGTGGATTGTGA

Predicted protein sequences of Glyma10g00534

Limit To All Plant Sequences

>Glyma10g00534.1   sequence type=predicted peptide   gene model=Glyma10g00534   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQFLKLPRLLMPYVRRIHLHSQPLPSQSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTYIINELCKGGL*

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