Glyma10g00510 - SoyBase

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Report for Sequence Feature Glyma10g00510

Feature Type:	gene_model
Chromosome:	Gm10
Start:	262842
stop:	267504
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02680	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 13 \| chr1:581084-581919 FORWARD LENGTH=126	SoyBase	E_val: 3.00E-42	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005667	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG3901	KOG	Transcription initiation factor IID subunit	JGI		ISS
PTHR11380	Panther	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	JGI		ISS
PTHR11380:SF5	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF02269	PFAM	Transcription initiation factor IID, 18kD subunit	JGI		ISS
UniRef100_B7FH99	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor TFIID subunit n=1 Tax=Medicago truncatula RepID=B7FH99_MEDTR	SoyBase	E_val: 1.00E-62	ISS
UniRef100_C6TAB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAB5_SOYBN	SoyBase	E_val: 5.00E-71	ISS

Expression Patterns of Glyma10g00510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g00510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g002500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g00510

Limit To All Plant Sequences

>Glyma10g00510.2   sequence type=transcript   gene model=Glyma10g00510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTACCACTGAAGAACGAAGTTTATCTCTCTCTTGTGACTTGTGAGCAATTCAAATTGCGGAGAACCTACACACTGCATTGGAAGATACAAGAATATCATCAGTTTCTCCTATTCATTAACTCCAGTTACTCACTGAAGATAACATTGGAAGCATTGGGCAATAAAAATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAACAGCTTCCTCACAACCATCAGAAACTTCGTCCAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGAAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTCTATGAATGAAGAGCTGAAACAAGCAAGAAAGGTTTTCGAATCAGACGAAGAGAAACTAAGGAAGGTTTTTGAGGTGGATGACTCACTTGAAGGATGAGTAATGAAGTTACTGAAATGCACTAATGACTCAGCTAACCTGTTCTTTGTTGGTTATGATGTGTTTCGCTTTCTGGAGGATGCTCTAGATATGAACTTAATCCCTAAACGTCCATGATCGAATTGAAAATTTGTTTTATCTTCGTACTCAAATGTAATGTGTACATAATCTTAAAATCAATTTGTG

Coding sequences of Glyma10g00510

Limit To All Plant Sequences

>Glyma10g00510.1   sequence type=CDS   gene model=Glyma10g00510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAACAGCTTCCTCACAACCATCAGAAACTTCGTCCAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGAAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTCTATGA

>Glyma10g00510.2   sequence type=CDS   gene model=Glyma10g00510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAATTCCTCTGCTGGAACCTCATCAAAACCAAGAACAGCTTCCTCACAACCATCAGAAACTTCGTCCAAGCGCAAAAGAGGAGTTTTCCAAAAAGAATTGCAGCACATGATGTATGGCTTTGAAGATGATCCTAATCCACTTCCTGAAAGTGTGGCTCTTATGGAGGACATTGTTGTGGAGTATGTCACAGAACTGGTACATAAAGCCCAAGATATTGGATCTCAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATTCGCCAAAACTTAACCGCTGTACAGAACTACTTCTATGA

Predicted protein sequences of Glyma10g00510

Limit To All Plant Sequences

>Glyma10g00510.1   sequence type=predicted peptide   gene model=Glyma10g00510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSSAGTSSKPRTASSQPSETSSKRKRGVFQKELQHMMYGFEDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLL*

>Glyma10g00510.2   sequence type=predicted peptide   gene model=Glyma10g00510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSSAGTSSKPRTASSQPSETSSKRKRGVFQKELQHMMYGFEDDPNPLPESVALMEDIVVEYVTELVHKAQDIGSQRGKLSVEDFLYLIRKDSPKLNRCTELLL*

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