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Report for Sequence Feature Glyma10g00500

Feature Type:gene_model
Chromosome:Gm10
Start:257160
stop:258808
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g00500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36240AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112 SoyBaseE_val: 2.00E-69ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG2988 KOG 60S ribosomal protein L30 JGI ISS
PTHR11449Panther RIBOSOMAL PROTEIN L30 JGI ISS
PF01248PFAM Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JGI ISS
UniRef100_I1L7D4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L7D4_SOYBN SoyBaseE_val: 9.00E-76ISS
UniRef100_O49884UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L30 n=1 Tax=Lupinus luteus RepID=RL30_LUPLU SoyBaseE_val: 3.00E-74ISS

Expression Patterns of Glyma10g00500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00500
ParalogEvidenceComments
Glyma02g00490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g002400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g00500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g00500
>Glyma10g00500.1   sequence type=CDS   gene model=Glyma10g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCAGCCAAGAAAACCAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGAAAATTCACCCTCGGTTACAAGACGGTTCTCAAATCACTTAGGAGCTCCAAAGGGAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGGAAATCAGAGATTGAATACTATGCTATGTTGGCCAAGGTTGGAGTTCATCATTACAATGGGAACAATGTGGATTTGGGCACTGCATGTGGAAAATATTACAGAGTGTGCTGCCTTAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTACCTGGCGAACAGTAA
Predicted protein sequences of Glyma10g00500
>Glyma10g00500.1   sequence type=predicted peptide   gene model=Glyma10g00500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGEQ*






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