Glyma10g00460 - SoyBase

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Report for Sequence Feature Glyma10g00460

Feature Type:	gene_model
Chromosome:	Gm10
Start:	227202
stop:	229373
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22970	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF506) \| chr3:8152592-8153881 FORWARD LENGTH=370	SoyBase	E_val: 4.00E-109	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04720	PFAM	Protein of unknown function (DUF506)	JGI		ISS
UniRef100_I1L7D1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7D1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SIH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis thaliana RepID=Q9SIH9_ARATH	SoyBase	E_val: 9.00E-77	ISS

Expression Patterns of Glyma10g00460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00460

Paralog	Evidence	Comments
Glyma02g00400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g002100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g00460

Limit To All Plant Sequences

>Glyma10g00460.1   sequence type=CDS   gene model=Glyma10g00460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCGATGAAGGTTCAACCAATTGCAATTGACATTGATTCCGAGATGGTGAAGGACACCGCGGCGGCGACGGCGGCGGCGGTGGTGGTTCGGAACGAGTCGGTGCTGAAGTCACGCCTGAAAAGGTTGTTCGTCTTCGACCGCCAGTTACCGAAAAACAACAACAGAGATGTTGCAGAATTCGAACCGAGCTCGGTGTGCTTGGCGAAAATGGTGCAGAATTTCATGGAGGAGCAGCCACCGGCGCCACCGAAATGTGGTCGCAACCGCTGCAACTGCTTCAACGCCAATAGCTCCGACGAGGACGATTTCGACCTCTTCGGTGCTGCACCGGCACCGGAATCATCCAACGCCGACGCCACTGAATCACTCAAGAGCTTGATCCCCTGCGCGAGTGTCGGCGAGAGGAACCTGCTAGCTGACGTGGCGAGGATTGTTGAGAAAAACGGCAAGTCGTTTAAGCGAAAAGACGATTTGAGGAAGGTCGTCGCAGAAGCACTTTCCTCTCTCGGTTACGATTCCTCTATCTGCAAATCGAAGTGGGAGAAAACTTCCTCTTGTCCTGCTGGTGAGTATGAATTCATCGATGCGATTGTGGAAGGGGAAAGGTTGATTGTCGATGTTGATTTTAGATCTGAGTTTGAAGTAGCGCGATCGACGGGAACGTACAAGGCGATGCTGCAATCGCTGCCGTTCACCTACGTCGGAAAATCGGAGAGGCTGACGGAGATCGTGGCGATTGTTTCCGAAGCGGCGAAGCAGAGTCTGAAGAAGAAAGGGATGCACGTTCCGCCGTGGAGGAAACGCGATTACATGCTCGCGAAGTGGCTCTCTCCGTCTAGTATTAGGGAGAAGGAGAAGGAGAACAAGCAACCCCCGTCCTCCTCCGTGCAAGTCGCCGCTGCCGCCGCCGCGCCGGAAACGGTGTCCGATGGTGATGCGGCGTCGACTACGGAGAGCGATTGCGGTGAGTTGGAGCTGATTTTCGGCGGGGAAATGTCGCCGGAGACTGAGTACGGCGAGGCTAAAGCGGAGTCGGCGGTGGCGACGAAGCCGGCGTGGCAACCGCCGGCGGTGAAGCCGAAGAGTGTTGAGAGAGGGACTAAGGTTGTGACCGGATTAGCCTCTCTTCTCAAGGACAAACCATAG

Predicted protein sequences of Glyma10g00460

Limit To All Plant Sequences

>Glyma10g00460.1   sequence type=predicted peptide   gene model=Glyma10g00460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPMKVQPIAIDIDSEMVKDTAAATAAAVVVRNESVLKSRLKRLFVFDRQLPKNNNRDVAEFEPSSVCLAKMVQNFMEEQPPAPPKCGRNRCNCFNANSSDEDDFDLFGAAPAPESSNADATESLKSLIPCASVGERNLLADVARIVEKNGKSFKRKDDLRKVVAEALSSLGYDSSICKSKWEKTSSCPAGEYEFIDAIVEGERLIVDVDFRSEFEVARSTGTYKAMLQSLPFTYVGKSERLTEIVAIVSEAAKQSLKKKGMHVPPWRKRDYMLAKWLSPSSIREKEKENKQPPSSSVQVAAAAAAPETVSDGDAASTTESDCGELELIFGGEMSPETEYGEAKAESAVATKPAWQPPAVKPKSVERGTKVVTGLASLLKDKP*

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