Glyma10g00450 - SoyBase

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Report for Sequence Feature Glyma10g00450

Feature Type:	gene_model
Chromosome:	Gm10
Start:	207793
stop:	212264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22990	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr3:8164015-8166145 FORWARD LENGTH=460	SoyBase	E_val: 0	ISS
GO:0006312	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic recombination	SoyBase	N/A	ISS
GO:0009560	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR12656	Panther	BRG-1 ASSOCIATED FACTOR 250 (BAF250)	JGI		ISS
UniRef100_I1L7C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Glycine max RepID=I1L7C9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J9I2Q4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Oxytricha trifallax RepID=J9I2Q4_9SPIT	SoyBase	E_val: 2.00E-10	ISS

Expression Patterns of Glyma10g00450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00450

Paralog	Evidence	Comments
Glyma02g00390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g001900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g00450

Limit To All Plant Sequences

>Glyma10g00450.2   sequence type=transcript   gene model=Glyma10g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGTCCCAAAGGAGCGACTCCATATGCAAATAGGACATGATTTTGCTGATTATTTCAATTGAAAGATTGATTGTTATTGTGATTGGAGTGTCGATGCATTCATGAGATCCATATTCCGATGTCTGCTACCAAAATTTCATTTTTTTGCTAGGATTATTTCAAAGAAATTGAAAAGGTGAGTATATCAATGCATAACAAAATCAAAGTAGCATAGAGGCAATTGGTGTCTAGATGAAAACATACTTCTATGAGAAGGATATTTTTGGAATTTAGCAAAAACCCATCATAGGTTGTGATAATAGTAATTTCGGCGGTGAGAATAGAAACTCTAACGATGGCTGTAGGCTCAAGAAGAAGCCCAACTAAGACCCTGGGACAAATCAAAATCGCATCGCAAACTCGAAAATCCCTACAGACAGAGAGAAAGATGCAGAAGAGAGAGCAGGGCAAGTCCGGCGGATCCGCCGGAGGAGGGGCGACGCCACCTGCGAAGAGAGGCCGTCCCTTCGGCAGCGGTAACAACAGTTCCTCTGCCGCTGCTTCAGCCGCGGATTCGGCGGCTCCGTCAACCCTCCTTGGTCCTTCCCTTCACGTTCACAACTCCTTCGCCGATCAGAACAACAAAAGAATTGTCTTGGCTCTTCAAAGTGGTCTGAAGAATGAGCTAACATGGGCTTTGAATACACTTACGCTGCTCTCCTTTAAAGAAAAGGATGACATGCGCAAGGATGCGACTCCCCTTGCGAAAATTCCCGGCTTGCTTGATGCGCTCCTACAAGTTATAGATGATTGGCGTGATATAGCACTCCCGAAGGAATTTGCCAAGACAACGAGGATCAGGACTTTAGGTGCAAATTCTGTTGTAAGTGGATTTGGGAGTGAATATCAGGCGCTGGGCTCAACTGGTACTCCCCACCGCCCTGGTGTAGGATCTGGCTCTGCTGGTATAGAATCAACGCAACAGAATGGCATGGCAAAATCTCGTTTTTCTGAGTTGTGGCTTGATGAAGATAGTTTATTTAATTTAGATGATGAAGGGCGAGCAGAAAAGCAGCAATGTGCTGTTGCTGCTTCAAATATCATCAGGAACTTCTCTTTCATGCCAGATAATGAAGTTATAATGGCCCAACATCGCCATTGTTTGGAAACAGCCTTCCAATGCATAGAAGATCATCTTGTAGAGGATGAGGAACTTGTAACAAATGCTCTAGAGACAATTGTTAACTTAGCTCCACTTCTGGATCTTCGAATATTTAGCTCTTCCAAACCTTCATTTATTAAAATAACAGAAAAACGTGCAGTTCAGGCCATCATGGGGATGTTGGAATCTGCAGTCAAAGCATGGCATTGTGCTGCTGCTGAATTACTTGGGCGTTTGATCATTAATCCTGACAATGAACCTTTCTTGCTTCCATTTTTTCCACAGATACACAAACGCTTAATTGATCTCATCAGCATGCCAGCTCTAGATGCTCAGGCAGCTGCTATAGGTGCACTCTATAACCTTGCTGAAGTTAATATGGACTGCAGATTGAAGATTGCTAACGAGAGATGGTGATCCCCTTAATCAATTTTTTTTTATAAAAAAATATTTAACATTTTTGGTTCTGTGAAATTATGGCAGTAATTTTCTTTAAATAACACTACTCAAATTTCCTCCAAACACAGGGCTATTGATCGGTTGCTTAAAGTGATAAAGATGCCACATCCAGTTCCAGAAGTTTGCCGGAAATCTGCCATGATATTGGAGAGTCTTGTGTCTGAGCCGCAAAACAGAAGTTTGCTGCTAGCATATGAGAATGCTTTTGCAGAGATAGTTTTCACTGATGGAAGATATTCCGATACATTTGCGAGGATATTGTATGAACTAACATCTAGACCAAGTAACAAAGTGGCAGCGGCTCGTGGCATATGGGGTATGTAAACATCAAACTGTGAAATGACTTTGATTAGTGATCAGTGCTATATATAGTTTTGCGACTTGGATGGCTTTTGGACGACTTTTGAAGATTCAAAATGTACATGTCTTCTGTGTAGGATTGTACTATACCTTAAGCATATTCAAGTTGTCATGTACTCCAGTTGTATGATGATAACTTCAGAATTATTCTTGTGTTTAAGACGATGTGAAGATTAGAAACTTCATTTCCTAGATATACGGTTGGAAAGTGCTCAATTCGTAGAATGAGGAAATGCTCTCTCTCTCTCTCTGGCTTTCCTCTCTCTTCTAACTATTAAATTATTGTTCATGGGATTAACCAAATATCATATTACAATATTCAATTTCAAGAAAAATGAAAAGGATCATGGTTCTAC

Coding sequences of Glyma10g00450

Limit To All Plant Sequences

>Glyma10g00450.1   sequence type=CDS   gene model=Glyma10g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTAGGCTCAAGAAGAAGCCCAACTAAGACCCTGGGACAAATCAAAATCGCATCGCAAACTCGAAAATCCCTACAGACAGAGAGAAAGATGCAGAAGAGAGAGCAGGGCAAGTCCGGCGGATCCGCCGGAGGAGGGGCGACGCCACCTGCGAAGAGAGGCCGTCCCTTCGGCAGCGGTAACAACAGTTCCTCTGCCGCTGCTTCAGCCGCGGATTCGGCGGCTCCGTCAACCCTCCTTGGTCCTTCCCTTCACGTTCACAACTCCTTCGCCGATCAGAACAACAAAAGAATTGTCTTGGCTCTTCAAAGTGGTCTGAAGAATGAGCTAACATGGGCTTTGAATACACTTACGCTGCTCTCCTTTAAAGAAAAGGATGACATGCGCAAGGATGCGACTCCCCTTGCGAAAATTCCCGGCTTGCTTGATGCGCTCCTACAAGTTATAGATGATTGGCGTGATATAGCACTCCCGAAGGAATTTGCCAAGACAACGAGGATCAGGACTTTAGGTGCAAATTCTGTTGTAAGTGGATTTGGGAGTGAATATCAGGCGCTGGGCTCAACTGGTACTCCCCACCGCCCTGGTGTAGGATCTGGCTCTGCTGGTATAGAATCAACGCAACAGAATGGCATGGCAAAATCTCGTTTTTCTGAGTTGTGGCTTGATGAAGATAGTTTATTTAATTTAGATGATGAAGGGCGAGCAGAAAAGCAGCAATGTGCTGTTGCTGCTTCAAATATCATCAGGAACTTCTCTTTCATGCCAGATAATGAAGTTATAATGGCCCAACATCGCCATTGTTTGGAAACAGCCTTCCAATGCATAGAAGATCATCTTGTAGAGGATGAGGAACTTGTAACAAATGCTCTAGAGACAATTGTTAACTTAGCTCCACTTCTGGATCTTCGAATATTTAGCTCTTCCAAACCTTCATTTATTAAAATAACAGAAAAACGTGCAGTTCAGGCCATCATGGGGATGTTGGAATCTGCAGTCAAAGCATGGCATTGTGCTGCTGCTGAATTACTTGGGCGTTTGATCATTAATCCTGACAATGAACCTTTCTTGCTTCCATTTTTTCCACAGATACACAAACGCTTAATTGATCTCATCAGCATGCCAGCTCTAGATGCTCAGGCAGCTGCTATAGGTGCACTCTATAACCTTGCTGAAGTTAATATGGACTGCAGATTGAAGATTGCTAACGAGAGATGGGCTATTGATCGGTTGCTTAAAGTGATAAAGATGCCACATCCAGTTCCAGAAGTTTGCCGGAAATCTGCCATGATATTGGAGAGTCTTGTGTCTGAGCCGCAAAACAGAAGTTTGCTGCTAGCATATGAGAATGCTTTTGCAGAGATAGTTTTCACTGATGGAAGATATTCCGATACATTTGCGAGGATATTGTATGAACTAACATCTAGACCAAGTAACAAAGTGGCAGCGGCTCGTGGCATATGGGGTATGTAA

>Glyma10g00450.2   sequence type=CDS   gene model=Glyma10g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTAGGCTCAAGAAGAAGCCCAACTAAGACCCTGGGACAAATCAAAATCGCATCGCAAACTCGAAAATCCCTACAGACAGAGAGAAAGATGCAGAAGAGAGAGCAGGGCAAGTCCGGCGGATCCGCCGGAGGAGGGGCGACGCCACCTGCGAAGAGAGGCCGTCCCTTCGGCAGCGGTAACAACAGTTCCTCTGCCGCTGCTTCAGCCGCGGATTCGGCGGCTCCGTCAACCCTCCTTGGTCCTTCCCTTCACGTTCACAACTCCTTCGCCGATCAGAACAACAAAAGAATTGTCTTGGCTCTTCAAAGTGGTCTGAAGAATGAGCTAACATGGGCTTTGAATACACTTACGCTGCTCTCCTTTAAAGAAAAGGATGACATGCGCAAGGATGCGACTCCCCTTGCGAAAATTCCCGGCTTGCTTGATGCGCTCCTACAAGTTATAGATGATTGGCGTGATATAGCACTCCCGAAGGAATTTGCCAAGACAACGAGGATCAGGACTTTAGGTGCAAATTCTGTTGTAAGTGGATTTGGGAGTGAATATCAGGCGCTGGGCTCAACTGGTACTCCCCACCGCCCTGGTGTAGGATCTGGCTCTGCTGGTATAGAATCAACGCAACAGAATGGCATGGCAAAATCTCGTTTTTCTGAGTTGTGGCTTGATGAAGATAGTTTATTTAATTTAGATGATGAAGGGCGAGCAGAAAAGCAGCAATGTGCTGTTGCTGCTTCAAATATCATCAGGAACTTCTCTTTCATGCCAGATAATGAAGTTATAATGGCCCAACATCGCCATTGTTTGGAAACAGCCTTCCAATGCATAGAAGATCATCTTGTAGAGGATGAGGAACTTGTAACAAATGCTCTAGAGACAATTGTTAACTTAGCTCCACTTCTGGATCTTCGAATATTTAGCTCTTCCAAACCTTCATTTATTAAAATAACAGAAAAACGTGCAGTTCAGGCCATCATGGGGATGTTGGAATCTGCAGTCAAAGCATGGCATTGTGCTGCTGCTGAATTACTTGGGCGTTTGATCATTAATCCTGACAATGAACCTTTCTTGCTTCCATTTTTTCCACAGATACACAAACGCTTAATTGATCTCATCAGCATGCCAGCTCTAGATGCTCAGGCAGCTGCTATAGGTGCACTCTATAACCTTGCTGAAGTTAATATGGACTGCAGATTGAAGATTGCTAACGAGAGATGGTGA

Predicted protein sequences of Glyma10g00450

Limit To All Plant Sequences

>Glyma10g00450.1   sequence type=predicted peptide   gene model=Glyma10g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGSRRSPTKTLGQIKIASQTRKSLQTERKMQKREQGKSGGSAGGGATPPAKRGRPFGSGNNSSSAAASAADSAAPSTLLGPSLHVHNSFADQNNKRIVLALQSGLKNELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKEFAKTTRIRTLGANSVVSGFGSEYQALGSTGTPHRPGVGSGSAGIESTQQNGMAKSRFSELWLDEDSLFNLDDEGRAEKQQCAVAASNIIRNFSFMPDNEVIMAQHRHCLETAFQCIEDHLVEDEELVTNALETIVNLAPLLDLRIFSSSKPSFIKITEKRAVQAIMGMLESAVKAWHCAAAELLGRLIINPDNEPFLLPFFPQIHKRLIDLISMPALDAQAAAIGALYNLAEVNMDCRLKIANERWAIDRLLKVIKMPHPVPEVCRKSAMILESLVSEPQNRSLLLAYENAFAEIVFTDGRYSDTFARILYELTSRPSNKVAAARGIWGM*

>Glyma10g00450.2   sequence type=predicted peptide   gene model=Glyma10g00450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVGSRRSPTKTLGQIKIASQTRKSLQTERKMQKREQGKSGGSAGGGATPPAKRGRPFGSGNNSSSAAASAADSAAPSTLLGPSLHVHNSFADQNNKRIVLALQSGLKNELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKEFAKTTRIRTLGANSVVSGFGSEYQALGSTGTPHRPGVGSGSAGIESTQQNGMAKSRFSELWLDEDSLFNLDDEGRAEKQQCAVAASNIIRNFSFMPDNEVIMAQHRHCLETAFQCIEDHLVEDEELVTNALETIVNLAPLLDLRIFSSSKPSFIKITEKRAVQAIMGMLESAVKAWHCAAAELLGRLIINPDNEPFLLPFFPQIHKRLIDLISMPALDAQAAAIGALYNLAEVNMDCRLKIANERW*

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