Glyma10g00380 - SoyBase

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Report for Sequence Feature Glyma10g00380

Feature Type:	gene_model
Chromosome:	Gm10
Start:	146754
stop:	150414
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10240	AT	Annotation by Michelle Graham. TAIR10: FAR1-related sequence 11 \| chr1:3356835-3359271 REVERSE LENGTH=680	SoyBase	E_val: 0	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF03101	PFAM	FAR1 DNA-binding domain	JGI		ISS
PF04434	PFAM	SWIM zinc finger	JGI		ISS
PF10551	PFAM	MULE transposase domain	JGI		ISS
UniRef100_I1L7C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7C4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SY66	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein FAR1-RELATED SEQUENCE 11 n=1 Tax=Arabidopsis thaliana RepID=FRS11_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g00380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g001400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g00380

Limit To All Plant Sequences

>Glyma10g00380.1   sequence type=CDS   gene model=Glyma10g00380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGAAGAGGCTGGATCTATGTTGGTAGTTTATGATGATCCCTCCGACCAACGCTCACTATCTTTGGATGATGCAAGCAGCACAGAGGAGTCACCTGATGAAACCAGGCTCTCCTTGGAAACAACAAATGATGCTATTCCATATATTGGTCAAAGGTTTGCCACTCATGATGCTGCTTATGAATTCTATAGTGAATTTGCTAAAAGGAGTGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAAGATGGTGTTGGAAAAGGACTTACTAGACGCTACTTTGTTTGTCACCGTGCTGGCAACACTCCTGTCAAGACATCAACTGAAAGTAAACCTCAAAGAAATAGAAAATCTTCTCGCTGTGGGTGTCAAGCTTACATGCGGATTAGCAAAACAACAGAATTTGGAGCTCCAGAATGGCGTGTGACTGGTTTTGCTAACCATCACAATCATGAACTTTTAGAACCAAACCAAGTTCGGTTCCTCCCTGCATACAGAACTATCTCGGATGCTGACAAAAACCGAATACTCATGTTTGCCAAAACAGGAATATCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGTGTGGAACCTGGATATTTGCCTTTTACTGAAAAAGATGTAAGGAATTTACTCCAGTCATTTAGGAAATTAGATCCAGAAGAAGAAAGCTTAGATTTATTAAGAATGTGCAGAAATATTAAGGAGAAAGATCCTAATTTTAAATTTGAGTACACACTTGATGCAAACAACCGTTTGGAGAATATTGCCTGGTCATATGCTTCATCAACCCAATTGTATGATATATTTGGTGATGCTGTGGTGTTTGATACATCACACCGCCTAACTGCATTTGATATGCCACTAGGGATATGGGTTGGAATAAATAATTATGGAATGCCTTGCTTTTTTGGCTGCACGCTTCTACGGGATGAAACAGTGAGGTCATTTTCCTGGGCACTGAAGGCTTTCTTAGGGTTCATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAATATATGTCTCAAAGAAGCACTATCCACAGAAATGCCAACAACAAAACATGCTTTCTGTATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTTAATGCTGTTTTAGGGGAACGATACAATGATTGGAAGGCAGAATTTTATAGACTTTATAATCTTGAGTCAGTTGAGGATTTTGAACTAGGCTGGAGGGAAATGGCTTGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGTTCACGTTCTCTTTGGGCGTTGCCATTTTTGAGAAGCCATTTTCTTGCTGGGATGACTACAACTGGTCAGTCAAAGTCAATTAATGCTTTTATTCAACGATTTCTGAGTGCACAGACACGCCTTGCGCACTTTGTTGAACAGGTTGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTTTGCCTCAAAACAGGGGCCCCCATGGAATCACACGCCGCCACAATCCTCACTCCTTTTGCCTTCTCAAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCGTCTTTTTCAATTGAAGATGGTTTTCTTGTGAGGCACCACACAAAAGCTGAGGGAGGCCGGAAAGTTTATTGGGCCCCTCAAGAAGGAATTATAAGTTGTAGCTGCCATCAGTTTGAGTTCACTGGTATTCTCTGTCGGCATTCTCTTAGAGTTCTTTCAACAGGAAATTGCTTTCAGATTCCAGATAGATATCTTCCTATTCGATGGCGTCGGATCAACATGCCGTCTTCTAAGCTTCTTCAAAGTGCACCAAATGATCATGCTGAAAGAGTTAAGTTGTTACAAAATATGGTTTCATCTCTGATGACAGAATCTGCTAAATCTAAGGAACGGTTAGATATTGCAACAGAACAAGTAACCCTCCTTCTGTCTCGCATAAGAGAACAACCAATTTCGTTACAAGTTGGCCGAGATATTTCATCCATCAATAGGAATCTTTGA

Predicted protein sequences of Glyma10g00380

Limit To All Plant Sequences

>Glyma10g00380.1   sequence type=predicted peptide   gene model=Glyma10g00380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEEAGSMLVVYDDPSDQRSLSLDDASSTEESPDETRLSLETTNDAIPYIGQRFATHDAAYEFYSEFAKRSGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTEFGAPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDADKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKEKDPNFKFEYTLDANNRLENIAWSYASSTQLYDIFGDAVVFDTSHRLTAFDMPLGIWVGINNYGMPCFFGCTLLRDETVRSFSWALKAFLGFMNGKAPQTILTDQNICLKEALSTEMPTTKHAFCIWMIVAKFPSWFNAVLGERYNDWKAEFYRLYNLESVEDFELGWREMACSFGLHSNRHMVNLYSSRSLWALPFLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATILTPFAFSKLQEQLVLAAHYASFSIEDGFLVRHHTKAEGGRKVYWAPQEGIISCSCHQFEFTGILCRHSLRVLSTGNCFQIPDRYLPIRWRRINMPSSKLLQSAPNDHAERVKLLQNMVSSLMTESAKSKERLDIATEQVTLLLSRIREQPISLQVGRDISSINRNL*

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