Glyma10g00210 - SoyBase

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Report for Sequence Feature Glyma10g00210

Feature Type:	gene_model
Chromosome:	Gm10
Start:	15253
stop:	25913
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g00210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35970	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:14119060-14123078 REVERSE LENGTH=961	SoyBase	E_val: 0	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1803	KOG	DNA helicase	JGI		ISS
PTHR10887	Panther	DNA2/NAM7 HELICASE FAMILY	JGI		ISS
PTHR10887:SF140	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04851	PFAM	Type III restriction enzyme, res subunit	JGI		ISS
UniRef100_B9SDE3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-binding protein smubp-2, putative n=1 Tax=Ricinus communis RepID=B9SDE3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1L7B1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L7B1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g00210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g00210

Paralog	Evidence	Comments
Glyma02g00330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g00210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g000200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g00210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g00210

Limit To All Plant Sequences

>Glyma10g00210.1   sequence type=CDS   gene model=Glyma10g00210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACAGCGCTCACTTGCTTCTTCTGTGGTAGACTCCCACCTGCAACTGCAAGTGAGCACTTTCGTTGTAATAATGCCTCCCCCTCTAGACACGTGCATTTCTCTTTGCCTCCTTCATTTGTTATTGGAACCCATAGGCTAATTCGAAACGCCACTAACACCAATGAAACTAAGGTGGTTTCCAGTACTAATGTCAAAAGTAGAAGAAGGAGAAGAAGAAGTGGCTTTGTTGACAAAACTTGTCAAACTCGGGAGGTGGAGGAGGGTATTCTTCATCAGAACGGAGACCCTATTGGGAAGAAGGATCTCGGGAAGAGTGTGATAAGGTGGATTCGTGATAGCATGAGGGCCATGGCGTCTGATTTAGCTGCGGCAGAGTTAGAGGGAGGAGAGGGAGAGTTTGAGTTGTGGGAGCTCATGGGACCTGGTCTCACTTTTATTATGCTGGCACAGCCATATCTCAATGCTGTTCCTATGCCCATTGGCCTTGAGGGTCTCTGCTTGAAGGCCTGCACGCACTATCCCACTCTTTTCGACCATTTTCAGAGAGAGCTTCGCCAAGTTCTCCGAGACCTGCAGCAGAGTAACTCCTTCATTCAGGACTGGCGTGACACCAAGTCTTGGAAACTACTTAAGGACCTCGCCAATTCAGCTCAGCATAGGGCGGTTGTGAGAAAGATAACGCAACCCAAGAGTGTCCAAGGCGTTTTAGGAATGGACTTCGAAAAGGTCAAAGCATTACAGCACAGGATTGACGAATTCACCACCCATATGTCAGAACTACTCCGTATTGAAAGGGATGCTGAGTTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATACTTCTGATTCTTCAAAAACGATTGATTTCTTGGTTAGCCATAGCCAGCCTCAACAAGAACTCTGCGACACCATTTGTAATTTAAACGCTATCAGTACCTCTACAGGACTTGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGGAACCACCGGTTACCACCAACCACTCTTTCACCTGGAGACATGGTTTGTGTGAGAACATATGACAGCATGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTGAACAGTTTTGGGGATGATGGCTATAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACTTATGAGCGCAACTGTGAAGCTTTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTTCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAGAAAAATCATTTGGCTGACTGGGCAGAAGAAAAATTGGATGGAAGATTAGGAAATGAAACCTTTGATGATTCTCAGTGGAGAGCAATTGCAATGGGTTTGAATAAAAAGAGGCCTGTATTGGTTATCCAAGGCCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTAGAAAAGCTTTCAAATGTTGGATTAAATATAGTGCGGGTTGGAAATCCAGCTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGAAGAAATTGTAAATGCTAAGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGAAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTTCAGGCATACGCCAACTTCTGAAGCAACTGGGAAGGTCACTGAAGAAAAAGGAAAAGCAGACCGTAATTGAAGTTCTGTCTAGTGCTCAAGTTGTGGTTGCCACTAATACTGGAGCAGCTGACCCTTTGGTTCGAAGGCTAGATACCTTTGATTTGGTTGTCATAGATGAAGCGGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGCATTCTTGCTGGTGATCAATGCCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGTTGGTCTAGGAATATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGGTTAACAACACAATACCGTATGAATGATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGAGGATTATTGAAGTCCTCTGAGACTGTCTTTTCTCATCTTCTAGTAGACTCTCCTTTTGTTAAGCCTACTTGGATAACACAATGCCCGCTGCTATTGCTAGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGTGAAGAGCATCTAGACCCGGCTGGAACAGGCTCACTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTATTTTCCTTAATCTATGCCGGTGTTAGCCCAACAGCTATTGCAGTGCAATCCCCTTATGTTGCTCAAGTACAACTTTTGAGGGACAAGCTTGATGAATTTCCAGAAGCAGCAGGTACTGAGGTTGCAACCATTGACAGTTTTCAAGGTCGGGAAGCTGATGCAGTAATTTTATCCATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTTGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGGCTTCTGCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGATATGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG

Predicted protein sequences of Glyma10g00210

Limit To All Plant Sequences

>Glyma10g00210.1   sequence type=predicted peptide   gene model=Glyma10g00210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METALTCFFCGRLPPATASEHFRCNNASPSRHVHFSLPPSFVIGTHRLIRNATNTNETKVVSSTNVKSRRRRRRSGFVDKTCQTREVEEGILHQNGDPIGKKDLGKSVIRWIRDSMRAMASDLAAAELEGGEGEFELWELMGPGLTFIMLAQPYLNAVPMPIGLEGLCLKACTHYPTLFDHFQRELRQVLRDLQQSNSFIQDWRDTKSWKLLKDLANSAQHRAVVRKITQPKSVQGVLGMDFEKVKALQHRIDEFTTHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKTIDFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTYDSMGAITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNHLADWAEEKLDGRLGNETFDDSQWRAIAMGLNKKRPVLVIQGPPGTGKTGLLKQLIACAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLASGIRQLLKQLGRSLKKKEKQTVIEVLSSAQVVVATNTGAADPLVRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEVGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDKLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN*

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