SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01910 | AT | Annotation by Michelle Graham. TAIR10: Microtubule associated protein (MAP65/ASE1) family protein | chr2:417191-420182 FORWARD LENGTH=608 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| KOG4302 | KOG | Microtubule-associated protein essential for anaphase spindle elongation | JGI | ISS | |
| PTHR19321 | Panther | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED | JGI | ISS | |
| PF03999 | PFAM | Microtubule associated protein (MAP65/ASE1 family) | JGI | ISS | |
| UniRef100_B9S7E4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PLE, putative n=1 Tax=Ricinus communis RepID=B9S7E4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L7A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L7A6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g42210 not represented in the dataset |
Glyma09g42210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g00290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g285100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g42210.1 sequence type=CDS gene model=Glyma09g42210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGCCATTGGGGGACATGGCACTAGTATCCGCACAAGCTCTACTTGCACTGCTTTGCTCAGAGAACTTGAGCAAATATGGAACGATATTGGGGAGACCGAAGTGGAGAAAGATCGAATGCTGATGGAATTGGAGAGGGAATGCTTAGAAGTATACAGGAGAAAGGTTGATGAGGCTGTTAACACCAAAGCACGCTTTCATCAAACAGTTGCCGCCAAGGAAGCAGAGCTTGCAACACTAATGGCTGCGCTTGGCGAACACGATATTCATTCACCGATTAAGACGGAGAAGCGATCAGTATCCCTGAAGCAGAAACTTGCATCCATCACACCTTGGGTTGAAGAATTGAAGAAGAAAAAAGATGAAAGGTTGAAGCAATTTGAAGATGTAAAGGCTCAAATAGAAAAGATAAGTGGGGAGATTTTTGGATTCCATTCTGTCAATAATGCTTTGAGCAGCACAACAGTTGAGGATGATCAGGACTTGTCACTTAGGAGACTTAATGAATATCAAACGCATCTCCGAACACTTCAAAAAGAAAAGTCTGATCGCCTTCAAAAGGTCTTGCAATGCGTGAATGAGGTGCATTCTCTTTGTAGTGTGCTTGGGTTGGATTTTGGTCAGACCGTGGGTGATGTTCATCCAAGTTTGCATGGGACTCAGGTGGAACAGTCAACTAATATTAGCAATAGCACATTGGAAGGTCTAGAGCAGGCCATTCTCAAGTTAAAAATAGAAAGGAAAACTAGAATTCAGAAGCTGAAGGATGTTGTAGCAAAACTATTTGAACTTTGGAATTTGATGGACTCTTCAAAAGAAGAGAGAAACTGTTTTATGAAGATTACTTCTATTGTTGGAACCTCAGAATCAGAAATCACTGAACGAGGTGTTCTTTCAACAGAAATGATAGAGAAGGCTTCAGCAGAAGTGGACAGGCTTGCCAAACTAAAAGCAAGCAGAATGAAAGAACTTGTTTTTAAGAAGAGGTCAGAGTTAGAGGAAATATGTAGATTGACTCATATTGAACCAGATACAAGTACTGCGGCCGAGAAAGCTAGTGCATTAATAGATTCTGGACTGGTGGATCCTTCTGAGCTATTAGCCAACATTGAAGAACAGATAATTAAGGCAAAAGGTGAAGCTTTGAGTAGAAAAGAAGTAACAGATAGGATTGATAAGTGGTTTGCTGCATGTGAAGAGGAGAATTGGCTTGACAAATATAATCAAGATGACAACCGATACAGTGCTGGGCGAGGTGCTCACATTAATCTTAAACGTGCAGAACATGCTAGAATAACTATAGGCAAAATTCCAGCTATGGTTGACAATCTTATAAACAAAACATTAGCCTGGGAAGATGAAAAGAAGACTCATTTTCTATATGATGGGGTACGTTTGGTGTCAATATTGGATGATTATAAACTGGCCAGACAACAGAAAGAGGAAGATAAGAGACGACATAGGGACCTTAAGAAGATGCAAGATCTACTCCTAAATCAAAAGGAAGCCATGTATGGTTCTAAACCTAGTCCAAGAAAAAATAACAGCTTTAGAAAGACTAATAGTTACCGCGCAAATGGCAATGGATCTATGCCTCCTACACCCCGTCGTAACTCCCTAAGTGGTGGAACAACATCTGAACTACTGACACCGCGGTCCTACTCTGGCCGTCAGAATGGATATTTTAAGGAAATGAGAAGATTGTCTACTGCACCACTGAACTTTGTGGCTATATCCAAGGAAGATACAATGTCTTATGCTTCCCTTTGTGGTTCAGAGCCTGATTCCCCTCCCCAAGTTTAA
>Glyma09g42210.1 sequence type=predicted peptide gene model=Glyma09g42210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLAIGGHGTSIRTSSTCTALLRELEQIWNDIGETEVEKDRMLMELERECLEVYRRKVDEAVNTKARFHQTVAAKEAELATLMAALGEHDIHSPIKTEKRSVSLKQKLASITPWVEELKKKKDERLKQFEDVKAQIEKISGEIFGFHSVNNALSSTTVEDDQDLSLRRLNEYQTHLRTLQKEKSDRLQKVLQCVNEVHSLCSVLGLDFGQTVGDVHPSLHGTQVEQSTNISNSTLEGLEQAILKLKIERKTRIQKLKDVVAKLFELWNLMDSSKEERNCFMKITSIVGTSESEITERGVLSTEMIEKASAEVDRLAKLKASRMKELVFKKRSELEEICRLTHIEPDTSTAAEKASALIDSGLVDPSELLANIEEQIIKAKGEALSRKEVTDRIDKWFAACEEENWLDKYNQDDNRYSAGRGAHINLKRAEHARITIGKIPAMVDNLINKTLAWEDEKKTHFLYDGVRLVSILDDYKLARQQKEEDKRRHRDLKKMQDLLLNQKEAMYGSKPSPRKNNSFRKTNSYRANGNGSMPPTPRRNSLSGGTTSELLTPRSYSGRQNGYFKEMRRLSTAPLNFVAISKEDTMSYASLCGSEPDSPPQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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