Glyma09g42180 - SoyBase

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Report for Sequence Feature Glyma09g42180

Feature Type:	gene_model
Chromosome:	Gm09
Start:	46786190
stop:	46799622
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g42180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19960	AT	Annotation by Michelle Graham. TAIR10: myosin 1 \| chr3:6949787-6956736 FORWARD LENGTH=1166	SoyBase	E_val: 0	ISS
GO:0006473	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein acetylation	SoyBase	N/A	ISS
GO:0030048	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament-based movement	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009504	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell plate	SoyBase	N/A	ISS
GO:0009524	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast	SoyBase	N/A	ISS
GO:0016459	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: myosin complex	SoyBase	N/A	ISS
GO:0003774	GO-mf	Annotation by Michelle Graham. GO Molecular Function: motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0160	KOG	Myosin class V heavy chain	JGI		ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF37	Panther	MYOSIN-VII	JGI		ISS
PF00063	PFAM	Myosin head (motor domain)	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7IEA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myosin-like protein n=1 Tax=Medicago truncatula RepID=G7IEA4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338E7C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E7C related cluster n=1 Tax=unknown RepID=UPI0002338E7C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g42180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g42180

Paralog	Evidence	Comments
Glyma20g00320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g42180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g284800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g42180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g42180

Limit To All Plant Sequences

>Glyma09g42180.2   sequence type=CDS   gene model=Glyma09g42180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGGACATCCAAGGTTCTGCCTGCTCTCCACTCTATCAAATCGTTGCCTCCCAAGTTCAAGATTACCACTGGTAATCCGACTTCTGGTCTAATGGAAAACCACGGAGTTGCTAAGCTGAGAAGCAGTGATGTGATCGGATCAGGTAGTCCAGAAAACGATGCTTTGATAGGGGAGGTTGCTGAGGAAGCTCGGGACTGTGTTGCTGACGTGGGTGTTTACGATGAGGACTTGGTGTACAGCAGAAAATGTGTGTCGTTAGAAGACAGGCCATCAATTGCTGATGAAGACTTAGAATCTGTTCCTCTGTCCTTCCCATCAATTTCAATCTCCTCTGGGGAACGCAGGTGGAGTGATACGACACCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATAACAACTTCTGGAAATGAATCCATCATTTCACTGCCTGACAGGAAGGTTTTGAAAGTGAAAGAAGAAAGTTTAGTACCAGCAAATCCTGATATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCGATATAGATACAATCAAAACATGATTTATACAAAAGCAGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTATATGGTAATGATTATATTGAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCAATAGCAGACACGGCCATCCGGGAAATGATACGAGTTGAAACTTTAGAGTTTAAGACCACTTTCATTTGTTTTAAGCAAGAACTTGCTCTGACTCTTGCTCTTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATTTTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCCGGTGCTAATATTCAAACATTAGTCCAATGCAATGAAGGGGAAAGATCATATCACATATTTTATCAGCTATGTGCTGGTGCACCTCCATCTCTCAGGGGAAAGCTAAACCTACAAAATGCAGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTAGTGGTGTTAATGATGCAGACGAATTTCGCACAGTCATGGAAGCTCTAGATGTTGTCCACATCAGAAAAGAAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAAGCTGTAGAAGATGAGGGTCTGTTCCATGTAGCCAAATTGATTGGCTGTGACATCGAAGATCTCAAGTTGATACTATCAACTCGCAAAATGAAAGTTGGTAATGATAATATTGTCCAAAAGTTGACGCTATCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCATGCCTGTTTGATTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTATGGCTTTGAATCTTTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTTAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATTCAAGATGGCATTGACTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGGTTATTATCCTTGTTAGATGAAGAGTCCACTTTCCCAAATGGCACAGATTTAACATTTGCTAACAAGCTTAAACAGCATTTGAATTCTAATTCATGTTTCAAAGGAGAAAGAGACCAAGCCTTTACTGTACACCATTATGCTGGGCAGGTAACCTATGATACAACTGGATTTCTGGAGAAAAACAGAGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCTTGCACGTGTCCTCTTCCTCAAATATTTGCATCTCATATGCTCACTCAGTCTGATAAGCCGGCAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTCCGACTGATGCAACAACTAGAGAGTACTACTCCACATTTTATTCGCTGCATTAAACCGAATAATCTCCAATCACCTGAATCATATGAGCAAGGGCTTGTATTGCAGCAGCTGAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCTGGCTTTCCAACAAGAATGTTTCACCAAAAGTTTGCTAGAAGATATGGTTTTCTCCTCCTTGATCATGTTGCTTCTCAGGATCCGCTTAGTGTTTCAGTTGCAATTCTTCATCAGTTTAATATTTTGCCTGAGATGTATCAAGTTGGCTACACAAAATTATTTTTCCGAACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTCCAAAGTTGTTTCAGGGGTTACCAAGCACGTCATTCTCTCAAGGATCTTCGGGGAGGAATCACTACTTTGCAGTCATTTATTAGGGGAGACAAAACCAGAAAGGCATATTCAGCATTACTTAAGAGGCATAGAGCTGCTGTTATTATACAGAAGCGCATCAAAGCAGTATTTGCAAGAAACAGAATGAGGACTATTAGTGATGCTGCAATAGTCATACAAGCAGTTATTCATGGTTGGTTGGTCAGAAGATGCTCAGGAAATATTGGATTTTTGAAATCTGGAGACATGAAGATGAAAGAGTCAGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCCGAATTACAGTGCCGGGTACTTAAGGCTGAAGCTGCCCTTAGAGAGAAAGAAGAGGAAAATGACATCCTTCATCAACGTCTCCAACAATATGAGAGCAGATGGTCTGAGTATGAATTAAAAATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATCGATGACTCTGAAAGAAATTCAGACGCATCTGTTAATGCAAGTGATGAGCGGGATTACAGCTGGGATGTGGGAGGTAATCACAAGCGCCAAGAAAGCAATGGGGCAAGATCAACGAGTGCTGGTTTAAGTGTTATAAGTCGGCTGGCTGAAGAATTTGAGCATAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAGGTAGAAGCAAGTTTGAACCCAGATCAAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAAACAAAAGTCATTATAAATAAACTTGGAAGCGAAGATGGCGCACTTGAGAAAATGAAGAAAAAGTGGTGGGGAAGAAGGAATAGTACAAGGATAAATTGA

Predicted protein sequences of Glyma09g42180

Limit To All Plant Sequences

>Glyma09g42180.2   sequence type=predicted peptide   gene model=Glyma09g42180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGTSKVLPALHSIKSLPPKFKITTGNPTSGLMENHGVAKLRSSDVIGSGSPENDALIGEVAEEARDCVADVGVYDEDLVYSRKCVSLEDRPSIADEDLESVPLSFPSISISSGERRWSDTTPYASKKKLQSWFQLPNGNWELGKIITTSGNESIISLPDRKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLYNLRYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKAIESPHVYAIADTAIREMIRVETLEFKTTFICFKQELALTLALGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTLVQCNEGERSYHIFYQLCAGAPPSLRGKLNLQNAEDYKYLRQSNCYSISGVNDADEFRTVMEALDVVHIRKEDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFHVAKLIGCDIEDLKLILSTRKMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGERDQAFTVHHYAGQVTYDTTGFLEKNRDLLHLDSIQLLSSCTCPLPQIFASHMLTQSDKPAVGPLHKSGGADSQKLSVATKFKGQLFRLMQQLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMFHQKFARRYGFLLLDHVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYQARHSLKDLRGGITTLQSFIRGDKTRKAYSALLKRHRAAVIIQKRIKAVFARNRMRTISDAAIVIQAVIHGWLVRRCSGNIGFLKSGDMKMKESDEVLVKSSFLAELQCRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDYSWDVGGNHKRQESNGARSTSAGLSVISRLAEEFEHRSQVFGDDAKFLVEVKSGQVEASLNPDQELRRLKQMFEAWKKDYGARLRETKVIINKLGSEDGALEKMKKKWWGRRNSTRIN*

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