Glyma09g42110 - SoyBase

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Report for Sequence Feature Glyma09g42110

Feature Type:	gene_model
Chromosome:	Gm09
Start:	46746422
stop:	46748437
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g42110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19940	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr3:6938211-6939975 FORWARD LENGTH=514	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0022857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity	SoyBase	N/A	ISS
KOG0254	KOG	Predicted transporter (major facilitator superfamily)	JGI		ISS
PTHR24063	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24063:SF116	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00083	PFAM	Sugar (and other) transporter	JGI		ISS
UniRef100_G7IBF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sugar transport protein n=1 Tax=Medicago truncatula RepID=G7IBF1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338E7A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E7A related cluster n=1 Tax=unknown RepID=UPI0002338E7A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g42110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g42110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g284200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g42110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g42110

Limit To All Plant Sequences

>Glyma09g42110.1   sequence type=CDS   gene model=Glyma09g42110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGTGGAAGTTTCGTTGATTCAAATGGAGTACGGCATTATGAAGGAAAAGTCACAGGGTTTGTGCTAATTACATGTTTTGTGGCTGCCATGGGGGGTCTTCTCTTTGGATACGATCTGGGTATTACAGGAGGAGTGACTTCTATGGACCCATTTTTGATCAAGTTCTTCCCTGTCGTGTATCGACAAATGAAAGGTGAAGCAGAAAGCAAGAGTCAATATTGTAAATTTGACAATCAACTTCTTACATTATTCACCTCTTCCTTATACCTCGCGGCATTGATAGCCTGCTTTTTTGCTTCTACTACAACTAGAATGTTTGGACGTAAACCCTCAATGTTTATTGGTGGCTTGTTTTTCCTTATTGGTGCATTGTTGAATGGCTTAGCCATTAACATCGAAATGCTTATCATTGGCCGTATATTACTAGGCTTTGGTGTGGGATTTTGTAATCAGTCTGTACCAGTGTATTTGTCTGAAATGGCTCCAGCAAAAATTAGAGGAGCACTCAATATTGGCTTTCAAATGATGATTACAATTGGTATCCTAATTGCAAACCTCATCAACTATGGTACCTCCAAGCATGAAAATGGTTGGAGAATGTCTTTGGGCATTGGAGCTGTGCCAGCAATTCTGTTGTGTATAGGATCTCTATGCTTAGATGAAACACCTAATTCTTTGATTGAAAGAGACCAACATGAAAAAGCCAAGGAAATGTTGAAGAAGATCCGTGGCACCGAGAACGTTGAAGAGGAATATCAAGATCTTGTTGATGCTAGTGAAGCAGCTAAAATGGTGGACCATCCATGGAAGAACATTGTGCAACCCAAATATAGGCCTCAACTCATTTTCTGCATTTTTATTCCAACATTTCAACAACTCACCGGCATCAATGTTATCATGTTTTATGCGCCAGTACTTTTTAAGATTTTAGGCTTCGGCAATGATGCTTCACTCATGTCTGCGGTTATAACCGGAGTTGTCAATGTTGTTGCCACACTTGTGTCTATTTTCACAGTGGACAAGTTTGGAAGAAGGGTATTATTTCTTGAAGGTGGCGCACAAATGCTTATTTGTCAGGTTATTATTGGAATCATGATTGGTTTAAAGTTTGGATTGAATGGTGAAGGATCATTTAGCAAAGGAGAAGCAGACGTTCTTTTGTTCTTTATTTGTGCATATGTTGCAGCATTTGCTTGGTCTTGGGGGCCATTGGGTTGGTTAGTGCCCAGTGAAACATGTTCTCTTGAGATTCGACCAGCAGGTCAAGCTATCAATGTTGCAATGAACATGCTCTTCACCTTTATCATTGCTCAAGTCTTCCTTACCATGCTTTGTCATCTTAAGTTTGGCCTCTTCTTCTTATTCGCTGGCTGTGTGGTTATCATGACCCTTTTCATTGCGTTGCTTCTACCCGAGACCAAGAATGTTCCAATTGAAGAAATGAATAGAATATGGAAGGCACATTGGTTCTGGACTAAGATTGTTCCTGATGTTGCTGCTACTGTCGCTCCTGGTAAAAAGGTGGTTCCATGA

Predicted protein sequences of Glyma09g42110

Limit To All Plant Sequences

>Glyma09g42110.1   sequence type=predicted peptide   gene model=Glyma09g42110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGGSFVDSNGVRHYEGKVTGFVLITCFVAAMGGLLFGYDLGITGGVTSMDPFLIKFFPVVYRQMKGEAESKSQYCKFDNQLLTLFTSSLYLAALIACFFASTTTRMFGRKPSMFIGGLFFLIGALLNGLAINIEMLIIGRILLGFGVGFCNQSVPVYLSEMAPAKIRGALNIGFQMMITIGILIANLINYGTSKHENGWRMSLGIGAVPAILLCIGSLCLDETPNSLIERDQHEKAKEMLKKIRGTENVEEEYQDLVDASEAAKMVDHPWKNIVQPKYRPQLIFCIFIPTFQQLTGINVIMFYAPVLFKILGFGNDASLMSAVITGVVNVVATLVSIFTVDKFGRRVLFLEGGAQMLICQVIIGIMIGLKFGLNGEGSFSKGEADVLLFFICAYVAAFAWSWGPLGWLVPSETCSLEIRPAGQAINVAMNMLFTFIIAQVFLTMLCHLKFGLFFLFAGCVVIMTLFIALLLPETKNVPIEEMNRIWKAHWFWTKIVPDVAATVAPGKKVVP*

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