SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23260 | AT | Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr5:7836442-7838340 FORWARD LENGTH=252 | SoyBase | E_val: 3.00E-64 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008360 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell shape | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0080155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Regulation of double fertilization forming a zygote and endosperm | SoyBase | N/A | ISS |
| GO:2000029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proanthocyanidin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0046983 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity | SoyBase | N/A | ISS |
| KOG0014 | KOG | MADS box transcription factor | JGI | ISS | |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF19 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| PF01486 | PFAM | K-box region | JGI | ISS | |
| UniRef100_G7IA45 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myocyte-specific enhancer factor 2C n=1 Tax=Medicago truncatula RepID=G7IA45_MEDTR | SoyBase | E_val: 9.00E-95 | ISS |
| UniRef100_UPI000233D907 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D907 related cluster n=1 Tax=unknown RepID=UPI000233D907 | SoyBase | E_val: 1.00E-163 | ISS |
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Glyma09g42061 not represented in the dataset |
Glyma09g42061 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g00401 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g283800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g42061.1 sequence type=CDS gene model=Glyma09g42061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGACGTGGAAAGATAGAGATAAAGAGGATCGAGAACAAAACCACAAGGCAAGTGACCTTCTCCAAAAGAAGATGTGGCCTCTTGAAGAAGACAAAGGAGCTTTCTGTGCTTTGTGATGCTAAGATCGGGATTATCATCTTCTCCAGCACCGGGAAGATGAGGGAATGGTGCACCGAACCCTTCAGGATGGAGCAGATCATAGAGCAGTACCAGATATCAAAAGGAACTTGCATAGCGGAACGTGGACGTGATCATCCCCGAGAAGAATTTGTCCATAACATGGCAATGCTGAGGCAGAAAACTATTCGTCTTGAATTGGAAATTCAACGCTATCTTGGAGAGGACACGAGGGGTTTGCAATATGAGGATTTGACTAAGCTTGAACAAGAATTGGAGAACTCTGTGGCAAGGGTTCGAAACCGTCATAATGAGCTCTTGCAACAACAAATGGAGAATCTGCGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATAATTTGTCCAATTGGGAACACCAAGCAGTGTTGGAGTTTCAGAAGGCCGCTGATACAGTGGAAGCAAGCAAACCAATGCATGTGATGGATCACTTCTCATTCTTTGAAGAGCAACCTGCTGGGAGCATCCTTCAACTAGCTTCTCCTATGCTTCCACACTTTTACCCATATCTTCAGCTGGCACAGCCCAATATCCAAGACTCAGTCAGGGACCAGAGCTATAACAATGAGCAATAG
>Glyma09g42061.1 sequence type=predicted peptide gene model=Glyma09g42061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGRGKIEIKRIENKTTRQVTFSKRRCGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCTEPFRMEQIIEQYQISKGTCIAERGRDHPREEFVHNMAMLRQKTIRLELEIQRYLGEDTRGLQYEDLTKLEQELENSVARVRNRHNELLQQQMENLRRKERILEEENNNLSNWEHQAVLEFQKAADTVEASKPMHVMDHFSFFEEQPAGSILQLASPMLPHFYPYLQLAQPNIQDSVRDQSYNNEQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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