SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33520 | AT | Annotation by Michelle Graham. TAIR10: D111/G-patch domain-containing protein | chr1:12157488-12158876 REVERSE LENGTH=462 | SoyBase | E_val: 2.00E-25 | ISS |
| GO:0009870 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PTHR15818 | Panther | G PATCH AND KOW-CONTAINING | JGI | ISS | |
| PTHR15818:SF2 | Panther | gb def: t54 protein | JGI | ISS | |
| PF01585 | PFAM | G-patch domain | JGI | ISS | |
| UniRef100_B9SAH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein MOS2, putative n=1 Tax=Ricinus communis RepID=B9SAH9_RICCO | SoyBase | E_val: 2.00E-33 | ISS |
| UniRef100_C6T4Y8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T4Y8_SOYBN | SoyBase | E_val: 2.00E-122 | ISS |
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Glyma09g42031 not represented in the dataset |
Glyma09g42031 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g00430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g283500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g42031.1 sequence type=CDS gene model=Glyma09g42031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAAGTTGTCTTTCTCCATCCCCACCGCAAAACCCCAATCGGTGGACACTTCCACCACCCGAAAGGACGACGACAGCGACGGAACCAAACAGTACATCACCGAATTCGACCCTTCCAAACCCGCAAACCCCAAAATCACAATCCCCCCAATCCAAAACCAGTGGAACCCCCAACAAGACAACGAACACAGCACCACGCGGTGGCGCCGCACTCCGGAGGAGACCGAGCTGCTGCGTAAGCTGAAACTGGAGGAAGATCTGCAGAGGTTGCCGGAGGACCAGGGGTTGGAGGAGTTCAAGGATGTCCCCGTCGAGGTTTTCGGCGAGGCGTTGCTCGCTGGGTATGGCTGGACGGAAGGGATGGGGATTGGGAAGAAGGCCAAAGAGGACGTGAAGGTGGTACAGGTCAAGGGGAGAACCTCAAGGGAAGGATTAGGGTTCGTTGCCAATGCTTCTGGCAACAATTTGAATCACTGCGACCATCATTTATGTAATTTGCAGTTCTAG
>Glyma09g42031.1 sequence type=predicted peptide gene model=Glyma09g42031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKKLSFSIPTAKPQSVDTSTTRKDDDSDGTKQYITEFDPSKPANPKITIPPIQNQWNPQQDNEHSTTRWRRTPEETELLRKLKLEEDLQRLPEDQGLEEFKDVPVEVFGEALLAGYGWTEGMGIGKKAKEDVKVVQVKGRTSREGLGFVANASGNNLNHCDHHLCNLQF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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