SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23230 | AT | Annotation by Michelle Graham. TAIR10: nicotinamidase 2 | chr5:7826005-7826601 REVERSE LENGTH=198 | SoyBase | E_val: 2.00E-94 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019674 | GO-bp | Annotation by Michelle Graham. GO Biological Process: NAD metabolic process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008936 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nicotinamidase activity | SoyBase | N/A | ISS |
| KOG4044 | KOG | Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) | JGI | ISS | |
| PTHR11080 | Panther | PYRAZINAMIDASE/NICOTINAMIDASE | JGI | ISS | |
| PTHR11080:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00857 | PFAM | Isochorismatase family | JGI | ISS | |
| UniRef100_G7IBE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isochorismatase n=1 Tax=Medicago truncatula RepID=G7IBE1_MEDTR | SoyBase | E_val: 2.00E-115 | ISS |
| UniRef100_I1L789 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L789_SOYBN | SoyBase | E_val: 9.00E-148 | ISS |
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Glyma09g42000 not represented in the dataset |
Glyma09g42000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g283200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g42000.4 sequence type=transcript gene model=Glyma09g42000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTGATGAGCCATGTGACTTGACGAGTTGGCAGGTTAGGTGGGATGGGACAAAAGTGAGCCCATGAACTAAATTCTCCACCTTATCCTGTTGAATTTAGGCTATGCTAGTGTGAAAATTCCATATTATGCAATACATAATTATTTGTTCTTTGTTAGCACTGTTGAAATTTCTAATCCGCAGTATCTAAAGTATGTCTCCAACAGTCACACACAAATGTCCTCTTCTCTGAAACGCTGCACATCCTACACCAAATACGAGATCAGAAAGCGAAACCCTGAACCAAAATCATGTGCCCTATTGGTAATCGACGTGCAAAACCACTTCTCATCCATGGCCACCCCAATCCTCCATAACCTCAACACCACCATCTCCCTCTGCCGCCGCGCCTCCATCCCCGTCATCTTCACTCGCCACTGCCACAAGTCACCCTCCGACGCCGGCATGCTGGAGGAGTGGTGGTCCGGGGACCTCATCGTCGACGGCACGGCGGAGGCCGAGCTCCTGGAGGCTCTGGACCGGAAAAGCAGCGACCTTGTGGTGGAGAAGAGCACCTACAGCGCGTTCAGGAGCACTGGCTTGGAAGAGAAGTTGGTGGAGATGGGTGTGAAGGAGGTCATAGTGACAGGTGTCATGACCAACCTGTGCTGCGAAACGACGTCGCGTGAGGCGTTCGTGAGAGGGTTTAGGGTTTTCTTCTCCGCGGACGCCACTGCCACCTCTGACGTGGAGCTTCACGAGGCCGCTTTGAAGAACTTGGCTTATGGTTTTGCTTACTTGGTTGATTGCCAGAGGCTTCAACATGCCCTCTCTGGTGCCAAGTGAATTCATCAACCGTGTGTTAATTGGACGAACAATTTGAGAGGATCGAATGTTGTTCGCGGTCATGTTGAGGAAATTGACAAGGCAATTAGTGAGTATTCTTAGGAAATGGGCATCAAGTCGATTTACTAGTCTATGTAGTAGCAGGTTTTTATAGTTTTTGGATTATTAGAAGCACAACTATGGGTTTTTGTGATGTATGTTGTCTAATCAAATCCTTCAAGGATGGTATTGTAGGATTTGGATTTCAACTGCCCGGTTACCAATGCATGTAAAGTGATTAATTATACATTCATCATCGTCATAGTACACCAATATAGGGAGAATTTATTGTATGAGAATGATTATCTTATCTTAAAATGAAAATGATTAATTTTATCTGTTAGATTAAAATGACATGTTAAAA
>Glyma09g42000.3 sequence type=CDS gene model=Glyma09g42000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTCTTCTCTGAAACGCTGCACATCCTACACCAAATACGAGATCAGAAAGCGAAACCCTGAACCAAAATCATGTGCCCTATTGGTAATCGACGTGCAAAACCACTTCTCATCCATGGCCACCCCAATCCTCCATAACCTCAACACCACCATCTCCCTCTGCCGCCGCGCCTCCATCCCCGTCATCTTCACTCGCCACTGCCACAAGTCACCCTCCGACGCCGGCATGCTGGAGGAGTGGTGGTCCGGGGACCTCATCGTCGACGGCACGGCGGAGGCCGAGCTCCTGGAGGCTCTGGACCGGAAAAGCAGCGACCTTGTGGTGGAGAAGAGCACCTACAGCGCGTTCAGGAGCACTGGCTTGGAAGAGAAGTTGGTGGAGATGGGTGTGAAGGAGGTCATAGTGACAGGTGTCATGACCAACCTGTGCTGCGAAACGACGTCGCGTGAGGCGTTCGTGAGAGGGTTTAGGGTTTTCTTCTCCGCGGACGCCACTGCCACCTCTGACGTGGAGCTTCACGAGGCCGCTTTGAAGAACTTGGCTTATGGTTTTGCTTACTTGGTTGATTGCCAGAGGCTTCAACATGCCCTCTCTGGTGCCAAGTGA >Glyma09g42000.4 sequence type=CDS gene model=Glyma09g42000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTCTTCTCTGAAACGCTGCACATCCTACACCAAATACGAGATCAGAAAGCGAAACCCTGAACCAAAATCATGTGCCCTATTGGTAATCGACGTGCAAAACCACTTCTCATCCATGGCCACCCCAATCCTCCATAACCTCAACACCACCATCTCCCTCTGCCGCCGCGCCTCCATCCCCGTCATCTTCACTCGCCACTGCCACAAGTCACCCTCCGACGCCGGCATGCTGGAGGAGTGGTGGTCCGGGGACCTCATCGTCGACGGCACGGCGGAGGCCGAGCTCCTGGAGGCTCTGGACCGGAAAAGCAGCGACCTTGTGGTGGAGAAGAGCACCTACAGCGCGTTCAGGAGCACTGGCTTGGAAGAGAAGTTGGTGGAGATGGGTGTGAAGGAGGTCATAGTGACAGGTGTCATGACCAACCTGTGCTGCGAAACGACGTCGCGTGAGGCGTTCGTGAGAGGGTTTAGGGTTTTCTTCTCCGCGGACGCCACTGCCACCTCTGACGTGGAGCTTCACGAGGCCGCTTTGAAGAACTTGGCTTATGGTTTTGCTTACTTGGTTGATTGCCAGAGGCTTCAACATGCCCTCTCTGGTGCCAAGTGA
>Glyma09g42000.3 sequence type=predicted peptide gene model=Glyma09g42000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSLKRCTSYTKYEIRKRNPEPKSCALLVIDVQNHFSSMATPILHNLNTTISLCRRASIPVIFTRHCHKSPSDAGMLEEWWSGDLIVDGTAEAELLEALDRKSSDLVVEKSTYSAFRSTGLEEKLVEMGVKEVIVTGVMTNLCCETTSREAFVRGFRVFFSADATATSDVELHEAALKNLAYGFAYLVDCQRLQHALSGAK* >Glyma09g42000.4 sequence type=predicted peptide gene model=Glyma09g42000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSLKRCTSYTKYEIRKRNPEPKSCALLVIDVQNHFSSMATPILHNLNTTISLCRRASIPVIFTRHCHKSPSDAGMLEEWWSGDLIVDGTAEAELLEALDRKSSDLVVEKSTYSAFRSTGLEEKLVEMGVKEVIVTGVMTNLCCETTSREAFVRGFRVFFSADATATSDVELHEAALKNLAYGFAYLVDCQRLQHALSGAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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