SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23200 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7807319-7808988 FORWARD LENGTH=399 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1L785 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L785_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q00VC3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 15 n=1 Tax=Ostreococcus tauri RepID=Q00VC3_OSTTA | SoyBase | E_val: 9.00E-38 | ISS |
|
Glyma09g41950 not represented in the dataset |
Glyma09g41950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g282800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41950.2 sequence type=transcript gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCGATTTTCACTTTCACTCTTTTATGTGTCATTCCCTACTCTTATGATTATCAACAGTGTTATTTTTCTTATAATGCATACACGAGCTTTGAATTTAGTGACAGAATTGAAAATTTTGTGTTTTCATTGTCAAAATTTGTGTTCTGTATTTTTTTCTTATGTTGGAAATGGTTTGCATAATGATTGCTTAGTTTCCTGTTTCAAAGTTTTTGATTCATAATGATTGCTTCCTCTCTCTCTCATGAATTGTTATCCTATTTGTAGTTATGAATGGATAAGTTTTCTCAATCTCTTCCTTGGTTATAACTATGTGATTTGTGTAGCTTATTCAATTTACTTCTGGTATTACAATTTCAGTACTTGTGTTGAGCCATTTCTTTTCTTTGGCAGAACATTTCCAGCCTAAAAACACTCCATTTTGCATCGAAAGCGCATTTTATTGTGAATAGTTCCGTCTCTTTCATCCAGTTATTGATGGCTCTTTTGTTCCAGAAATTTCAAGAGGCTGTGAAAACCCTGGCAAAGCGCCCTTCTTTCACTAAGGATCCTAGACAACTACAATTTGAAGCTGACATTAACCGCTTGTTCCTATATTTGAGCTATAATCATCTAGGGAAGAATGCTGATGAAGCACATGCTGAAGAGATTATTGAAATGGCTAGTAAAGCCTCATTTGCTGATCAACAAATGCAAGTACAAGAAAATGTTCATTCACAAATTAAAACATTTTGCACTTTCATGGATGAAATTCTACTTCCAAATGAAAAGATGGTAAATGAACATCAACTGCAAAACACCGTGCCTCGCCGAAGTGGGCTTGGTTTTGCTGTGGGTAGTAGGAATGATCCTGCCTATAATAATCTTGCTTCCCCCAAGACAAGACCATTAAGCCAAGCTGTAGTTTCTCAAAATTTAAAAGATCAACTTGGCTACACAGTTAATGTCACACCTTCTCAAATACCTCACAAGGATGCTGGCCAGGGTCTTTTTTTAGATGGCACAGTAGATGTTGGTGCTGTAGTGGCCTTTTATCCAGGCATAGTCTACTCTCCAGCTTATTACCGTTACATTCCAGGGTACCCAAAGGTTGATACACTGAACCCCTATTTGATTACAAGATATGATGGAAATGTCATCAATGCTCAACCTTGGGGTTCTGGAGGTGACAACCGAGAACTGTGGAATGGTAGAAAAACCGGAGAAATCAAGCCTGATGTAAAAGGAGCTGAGCCTGAGAAAGGTTCAGAAAGGTTCTGGAAACTGCTGAGTAAGCCTTTGGAAGGCTACCAAGGAGGTAACAATGAAGTGATTGAGCGTAGAAACCCATTAGCCTTAGCTCATTTTGCCAATCACCCTCCAAAAGGGGTGCAACCAAATGTCATGATTTGCCCTTATGACTTTCCATTGACCGAAAGCAACATGAGAGTCTACATTCCAAATGTGTTGTTTGGAAACGCAGAAGTAAATATGAGGAGATTTGGCAGCTTTTGGTTCAAGTCTGGTGGAGGGTCAAGAAATAGTGGATCAAATGTTCCAACACTAAAAACTCTTGTTTTGATTGCTACTAGGCCTCTCCAAGATGAGGAACTCTTCCTGAACTACAGGCTGAGCAATACTAAGCGCAGGCCGGAATGGTATAATCCGGTGGATGAAGAAGAGGATAGGAGAAGATGGAGCTAGCCAGTCGAGAATTCCCTTGTTTTTGTCTCATAGAAAGTTGTATTTGTGATCCTTATTTGGATGTTATTTTTGTTGACATACCAAGGATGATAAATTTTTTGTGGGATTGATTTTGTTGGTATGTTTTTAGAGGTCAAAATCCAACTCAAGGTGATGTACCGAAAATCCTAGTTCTATTAAACTAAATAATGATTAATGACAGTATCACCCTCAAAGTTTGTTGTTGTGGTTTCTTTTTATCTCACTTGTGTGGCATATTACATCAACAACGAACCTTGACATAGTTATTTTATATCTTTCT >Glyma09g41950.3 sequence type=transcript gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCGATTTTCACTTTCACTCTTTTATGTGTCATTCCCTACTCTTATGATTATCAACAGTGTTATTTTTCTTATAATGCATACACGAGCTTTGAATTTAGTGACAGAATTGAAAATTTTGTGTTTTCATTGTCAAAATTTGTGTTCTGTATTTTTTTCTTATGTTGGAAATGGTTTGCATAATGATTGCTTAGTTTCCTGTTTCAAAGTTTTTGATTCATAATGATTGCTTCCTCTCTCTCTCATGAATTGTTATCCTATTTGTAGTTATGAATGGATAAGTTTTCTCAATCTCTTCCTTGGTTATAACTATGTGATTTGTGTAGCTTATTCAATTTACTTCTGGTATTACAATTTCAGTACTTGTGTTGAGCCATTTCTTTTCTTTGGCAGAACATTTCCAGCCTAAAAACACTCCATTTTGCATCGAAAGCGCATTTTATTGTGAATAGTTCCGTCTCTTTCATCCAGTTATTGATGGCTCTTTTGTTCCAGAAATTTCAAGAGGCTGTGAAAACCCTGGCAAAGCGCCCTTCTTTCACTAAGGATCCTAGACAACTACAATTTGAAGCTGACATTAACCGCTTGTTCCTATATTTGAGAATGCTGATGAAGCACATGCTGAAGAGATTATTGAAATGGCTAGTAAAGCCTCATTTGCTGATCAACAAATGCAAGTACAAGAAAATGTTCATTCACAAATTAAAACATTTTGCACTTTCATGGATGAAATTCTACTTCCAAATGAAAAGATGGTAAATGAACATCAACTGCAAAACACCGTGCCTCGCCGAAGTGGGCTTGGTTTTGCTGTGGGTAGTAGGAATGATCCTGCCTATAATAATCTTGCTTCCCCCAAGACAAGACCATTAAGCCAAGCTGTAGTTTCTCAAAATTTAAAAGATCAACTTGGCTACACAGTTAATGTCACACCTTCTCAAATACCTCACAAGGATGCTGGCCAGGGTCTTTTTTTAGATGGCACAGTAGATGTTGGTGCTGTAGTGGCCTTTTATCCAGGCATAGTCTACTCTCCAGCTTATTACCGTTACATTCCAGGGTACCCAAAGGTTGATACACTGAACCCCTATTTGATTACAAGATATGATGGAAATGTCATCAATGCTCAACCTTGGGGTTCTGGAGGTGACAACCGAGAACTGTGGAATGGTAGAAAAACCGGAGAAATCAAGCCTGATGTAAAAGGAGCTGAGCCTGAGAAAGGTTCAGAAAGGTTCTGGAAACTGCTGAGTAAGCCTTTGGAAGGCTACCAAGGAGGTAACAATGAAGTGATTGAGCGTAGAAACCCATTAGCCTTAGCTCATTTTGCCAATCACCCTCCAAAAGGGGTGCAACCAAATGTCATGATTTGCCCTTATGACTTTCCATTGACCGAAAGCAACATGAGAGTCTACATTCCAAATGTGTTGTTTGGAAACGCAGAAGTAAATATGAGGAGATTTGGCAGCTTTTGGTTCAAGTCTGGTGGAGGGTCAAGAAATAGTGGATCAAATGTTCCAACACTAAAAACTCTTGTTTTGATTGCTACTAGGCCTCTCCAAGATGAGGAACTCTTCCTGAACTACAGGCTGAGCAATACTAAGCGCAGGCCGGAATGGTATAATCCGGTGGATGAAGAAGAGGATAGGAGAAGATGGAGCTAGCCAGTCGAGAATTCCCTTGTTTTTGTCTCATAGAAAGTTGTATTTGTGATCCTTATTTGGATGTTATTTTTGTTGACATACCAAGGATGATAAATTTTTTGTGGGATTGATTTTGTTGGTATGTTTTTAGAGGTCAAAATCCAACTCAAGGTGATGTACCGAAAATCCTAGTTCTATTAAACTAAATAATGATTAATGACAGTATCACCCTCAAAGTTTGTTGTTGTGGTTTCTTTTTATCTCACTTGTGTGGCATATTACATCAACAACGAACCTTGACATAGTTATTTTATATCTTTCT
>Glyma09g41950.1 sequence type=CDS gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTGTATACGATGATCTCGCTGCGGCGTCACTCTACCCTTCCAAGAACATTTCCAGCCTAAAAACACTCCATTTTGCATCGAAAGCGCATTTTATTGTGAATAGTTCCGTCTCTTTCATCCAGTTATTGATGGCTCTTTTGTTCCAGAAATTTCAAGAGGCTGTGAAAACCCTGGCAAAGCGCCCTTCTTTCACTAAGGATCCTAGACAACTACAATTTGAAGCTGACATTAACCGCTTGTTCCTATATTTGAGCTATAATCATCTAGGGAAGAATGCTGATGAAGCACATGCTGAAGAGATTATTGAAATGGCTAGTAAAGCCTCATTTGCTGATCAACAAATGCAAGTACAAGAAAATGTTCATTCACAAATTAAAACATTTTGCACTTTCATGGATGAAATTCTACTTCCAAATGAAAAGATGGTAAATGAACATCAACTGCAAAACACCGTGCCTCGCCGAAGTGGGCTTGGTTTTGCTGTGGGTAGTAGGAATGATCCTGCCTATAATAATCTTGCTTCCCCCAAGACAAGACCATTAAGCCAAGCTGTAGTTTCTCAAAATTTAAAAGATCAACTTGGCTACACAGTTAATGTCACACCTTCTCAAATACCTCACAAGGATGCTGGCCAGGGTCTTTTTTTAGATGGCACAGTAGATGTTGGTGCTGTAGTGGCCTTTTATCCAGGCATAGTCTACTCTCCAGCTTATTACCGTTACATTCCAGGGTACCCAAAGGTTGATACACTGAACCCCTATTTGATTACAAGATATGATGGAAATGTCATCAATGCTCAACCTTGGGGTTCTGGAGGTGACAACCGAGAACTGTGGAATGGTAGAAAAACCGGAGAAATCAAGCCTGATGTAAAAGGAGCTGAGCCTGAGAAAGGTTCAGAAAGGTTCTGGAAACTGCTGAGTAAGCCTTTGGAAGGCTACCAAGGAGGTAACAATGAAGTGATTGAGCGTAGAAACCCATTAGCCTTAGCTCATTTTGCCAATCACCCTCCAAAAGGGGTGCAACCAAATGTCATGATTTGCCCTTATGACTTTCCATTGACCGAAAGCAACATGAGAGTCTACATTCCAAATGTGTTGTTTGGAAACGCAGAAGTAAATATGAGGAGATTTGGCAGCTTTTGGTTCAAGTCTGGTGGAGGGTCAAGAAATAGTGGATCAAATGTTCCAACACTAAAAACTCTTGTTTTGATTGCTACTAGGCCTCTCCAAGATGAGGAACTCTTCCTGAACTACAGGCTGAGCAATACTAAGCGCAGGCCGGAATGGTATAATCCGGTGGATGAAGAAGAGGATAGGAGAAGATGGAGCTAG >Glyma09g41950.2 sequence type=CDS gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTTTTGTTCCAGAAATTTCAAGAGGCTGTGAAAACCCTGGCAAAGCGCCCTTCTTTCACTAAGGATCCTAGACAACTACAATTTGAAGCTGACATTAACCGCTTGTTCCTATATTTGAGCTATAATCATCTAGGGAAGAATGCTGATGAAGCACATGCTGAAGAGATTATTGAAATGGCTAGTAAAGCCTCATTTGCTGATCAACAAATGCAAGTACAAGAAAATGTTCATTCACAAATTAAAACATTTTGCACTTTCATGGATGAAATTCTACTTCCAAATGAAAAGATGGTAAATGAACATCAACTGCAAAACACCGTGCCTCGCCGAAGTGGGCTTGGTTTTGCTGTGGGTAGTAGGAATGATCCTGCCTATAATAATCTTGCTTCCCCCAAGACAAGACCATTAAGCCAAGCTGTAGTTTCTCAAAATTTAAAAGATCAACTTGGCTACACAGTTAATGTCACACCTTCTCAAATACCTCACAAGGATGCTGGCCAGGGTCTTTTTTTAGATGGCACAGTAGATGTTGGTGCTGTAGTGGCCTTTTATCCAGGCATAGTCTACTCTCCAGCTTATTACCGTTACATTCCAGGGTACCCAAAGGTTGATACACTGAACCCCTATTTGATTACAAGATATGATGGAAATGTCATCAATGCTCAACCTTGGGGTTCTGGAGGTGACAACCGAGAACTGTGGAATGGTAGAAAAACCGGAGAAATCAAGCCTGATGTAAAAGGAGCTGAGCCTGAGAAAGGTTCAGAAAGGTTCTGGAAACTGCTGAGTAAGCCTTTGGAAGGCTACCAAGGAGGTAACAATGAAGTGATTGAGCGTAGAAACCCATTAGCCTTAGCTCATTTTGCCAATCACCCTCCAAAAGGGGTGCAACCAAATGTCATGATTTGCCCTTATGACTTTCCATTGACCGAAAGCAACATGAGAGTCTACATTCCAAATGTGTTGTTTGGAAACGCAGAAGTAAATATGAGGAGATTTGGCAGCTTTTGGTTCAAGTCTGGTGGAGGGTCAAGAAATAGTGGATCAAATGTTCCAACACTAAAAACTCTTGTTTTGATTGCTACTAGGCCTCTCCAAGATGAGGAACTCTTCCTGAACTACAGGCTGAGCAATACTAAGCGCAGGCCGGAATGGTATAATCCGGTGGATGAAGAAGAGGATAGGAGAAGATGGAGCTAG >Glyma09g41950.3 sequence type=CDS gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGTAAAGCCTCATTTGCTGATCAACAAATGCAAGTACAAGAAAATGTTCATTCACAAATTAAAACATTTTGCACTTTCATGGATGAAATTCTACTTCCAAATGAAAAGATGGTAAATGAACATCAACTGCAAAACACCGTGCCTCGCCGAAGTGGGCTTGGTTTTGCTGTGGGTAGTAGGAATGATCCTGCCTATAATAATCTTGCTTCCCCCAAGACAAGACCATTAAGCCAAGCTGTAGTTTCTCAAAATTTAAAAGATCAACTTGGCTACACAGTTAATGTCACACCTTCTCAAATACCTCACAAGGATGCTGGCCAGGGTCTTTTTTTAGATGGCACAGTAGATGTTGGTGCTGTAGTGGCCTTTTATCCAGGCATAGTCTACTCTCCAGCTTATTACCGTTACATTCCAGGGTACCCAAAGGTTGATACACTGAACCCCTATTTGATTACAAGATATGATGGAAATGTCATCAATGCTCAACCTTGGGGTTCTGGAGGTGACAACCGAGAACTGTGGAATGGTAGAAAAACCGGAGAAATCAAGCCTGATGTAAAAGGAGCTGAGCCTGAGAAAGGTTCAGAAAGGTTCTGGAAACTGCTGAGTAAGCCTTTGGAAGGCTACCAAGGAGGTAACAATGAAGTGATTGAGCGTAGAAACCCATTAGCCTTAGCTCATTTTGCCAATCACCCTCCAAAAGGGGTGCAACCAAATGTCATGATTTGCCCTTATGACTTTCCATTGACCGAAAGCAACATGAGAGTCTACATTCCAAATGTGTTGTTTGGAAACGCAGAAGTAAATATGAGGAGATTTGGCAGCTTTTGGTTCAAGTCTGGTGGAGGGTCAAGAAATAGTGGATCAAATGTTCCAACACTAAAAACTCTTGTTTTGATTGCTACTAGGCCTCTCCAAGATGAGGAACTCTTCCTGAACTACAGGCTGAGCAATACTAAGCGCAGGCCGGAATGGTATAATCCGGTGGATGAAGAAGAGGATAGGAGAAGATGGAGCTAG
>Glyma09g41950.1 sequence type=predicted peptide gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVYDDLAAASLYPSKNISSLKTLHFASKAHFIVNSSVSFIQLLMALLFQKFQEAVKTLAKRPSFTKDPRQLQFEADINRLFLYLSYNHLGKNADEAHAEEIIEMASKASFADQQMQVQENVHSQIKTFCTFMDEILLPNEKMVNEHQLQNTVPRRSGLGFAVGSRNDPAYNNLASPKTRPLSQAVVSQNLKDQLGYTVNVTPSQIPHKDAGQGLFLDGTVDVGAVVAFYPGIVYSPAYYRYIPGYPKVDTLNPYLITRYDGNVINAQPWGSGGDNRELWNGRKTGEIKPDVKGAEPEKGSERFWKLLSKPLEGYQGGNNEVIERRNPLALAHFANHPPKGVQPNVMICPYDFPLTESNMRVYIPNVLFGNAEVNMRRFGSFWFKSGGGSRNSGSNVPTLKTLVLIATRPLQDEELFLNYRLSNTKRRPEWYNPVDEEEDRRRWS* >Glyma09g41950.2 sequence type=predicted peptide gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLFQKFQEAVKTLAKRPSFTKDPRQLQFEADINRLFLYLSYNHLGKNADEAHAEEIIEMASKASFADQQMQVQENVHSQIKTFCTFMDEILLPNEKMVNEHQLQNTVPRRSGLGFAVGSRNDPAYNNLASPKTRPLSQAVVSQNLKDQLGYTVNVTPSQIPHKDAGQGLFLDGTVDVGAVVAFYPGIVYSPAYYRYIPGYPKVDTLNPYLITRYDGNVINAQPWGSGGDNRELWNGRKTGEIKPDVKGAEPEKGSERFWKLLSKPLEGYQGGNNEVIERRNPLALAHFANHPPKGVQPNVMICPYDFPLTESNMRVYIPNVLFGNAEVNMRRFGSFWFKSGGGSRNSGSNVPTLKTLVLIATRPLQDEELFLNYRLSNTKRRPEWYNPVDEEEDRRRWS* >Glyma09g41950.3 sequence type=predicted peptide gene model=Glyma09g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASKASFADQQMQVQENVHSQIKTFCTFMDEILLPNEKMVNEHQLQNTVPRRSGLGFAVGSRNDPAYNNLASPKTRPLSQAVVSQNLKDQLGYTVNVTPSQIPHKDAGQGLFLDGTVDVGAVVAFYPGIVYSPAYYRYIPGYPKVDTLNPYLITRYDGNVINAQPWGSGGDNRELWNGRKTGEIKPDVKGAEPEKGSERFWKLLSKPLEGYQGGNNEVIERRNPLALAHFANHPPKGVQPNVMICPYDFPLTESNMRVYIPNVLFGNAEVNMRRFGSFWFKSGGGSRNSGSNVPTLKTLVLIATRPLQDEELFLNYRLSNTKRRPEWYNPVDEEEDRRRWS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
