Glyma09g41900 - SoyBase

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Report for Sequence Feature Glyma09g41900

Feature Type:	gene_model
Chromosome:	Gm09
Start:	46587268
stop:	46588824
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45570	AT	Annotation by Michelle Graham. TAIR10: cytochrome P450, family 76, subfamily C, polypeptide 2 \| chr2:18779935-18781922 REVERSE LENGTH=512	SoyBase	E_val: 1.00E-101	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0019375	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0019825	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxygen binding	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PTHR24298	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24298:SF44	Panther		JGI		ISS
PF00067	PFAM	Cytochrome P450	JGI		ISS
UniRef100_B9RBW9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RBW9_RICCO	SoyBase	E_val: 3.00E-127	ISS
UniRef100_UPI0002338E71	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338E71 related cluster n=1 Tax=unknown RepID=UPI0002338E71	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g41900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g41900 not represented in the dataset	Glyma09g41900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g41900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g282300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g41900

Limit To All Plant Sequences

>Glyma09g41900.1   sequence type=CDS   gene model=Glyma09g41900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGGTTGGAAGTCCAAATTTGGCTGATTGTTTCCCAGTGTTGAAGGTGGTTGACCCTCATGGAATCAGAAGGCGCACGGGGAGTTACTTTTGGAAGTTGTTGACCATATTCAAGGGCTTGGTTGACAAAAGGTTGAAGCTAAGGAATGAGGATGGTTACTGCACCAAAAATGACATGTTAGATGCCATTCTCAACAATGCTGAAGAGAACAGCCAGGAGATGTACAGAGATAAGATTGAACGTTTGTCATTGGACTTGTTTGTGGCAGGAACAGATACAGTAACATCCACAGTAGAATGGGCAATGGCTGAGTTACTCCACAACCCAAACATAATGTCAAAAGCAAAGGCAGAGCTAGAGAACACTATTGGCAAAGGCAACCTGGTGGAAGCATCAGACATTGCAAGACTCCCTTACTTGCAAGCAATAGTGAAAGAGACCTTCAGGCTGCACCCAGCAGTTCCACTTTTGCCTAGAAAGGCTGAAGTGGATTTGGAGATGCATGGCTACACTGTCCCAAAGGGTGCACAAGTGTTGGTTAATATGTGGGCCATTGGTAGGGACCCAAAGTTGTGGGACAACAACCCTAGTTTGTTTTCACCAGAGAGGTTTTTGGGGTCAGAAATTGACTTTAGAGGAAGGAGTTTTGAGCTGACCCCATTTGGTGCTGGTAGGAGGATGTGTCCTGGCTTGCCCTTGGCCATAAGATTGTTGTTCTTGATGTTGGGTTTGCTCATCAATTCCTTTGATTGGATGCTTGAGGATGGAATTAAACCTGAGGATATGAATATGGATGAAAAATTTGGACTTACCTTGGGGAAGGCTCAACCTGTGCTAGCTGTTCCAATATTCAAACCAAGCAATTAG

Predicted protein sequences of Glyma09g41900

Limit To All Plant Sequences

>Glyma09g41900.1   sequence type=predicted peptide   gene model=Glyma09g41900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEVGSPNLADCFPVLKVVDPHGIRRRTGSYFWKLLTIFKGLVDKRLKLRNEDGYCTKNDMLDAILNNAEENSQEMYRDKIERLSLDLFVAGTDTVTSTVEWAMAELLHNPNIMSKAKAELENTIGKGNLVEASDIARLPYLQAIVKETFRLHPAVPLLPRKAEVDLEMHGYTVPKGAQVLVNMWAIGRDPKLWDNNPSLFSPERFLGSEIDFRGRSFELTPFGAGRRMCPGLPLAIRLLFLMLGLLINSFDWMLEDGIKPEDMNMDEKFGLTLGKAQPVLAVPIFKPSN*

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