SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G18610 | AT | Annotation by Michelle Graham. TAIR10: nucleolin like 2 | chr3:6404270-6407822 REVERSE LENGTH=636 | SoyBase | E_val: 3.00E-42 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG0123 | KOG | Polyadenylate-binding protein (RRM superfamily) | JGI | ISS | |
| PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24012:SF59 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_Q41042 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: L. (clone na-481-5) n=1 Tax=Pisum sativum RepID=Q41042_PEA | SoyBase | E_val: 1.00E-51 | ISS |
| UniRef100_UPI000233D911 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D911 related cluster n=1 Tax=unknown RepID=UPI000233D911 | SoyBase | E_val: 0 | ISS |
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Glyma09g41821 not represented in the dataset |
Glyma09g41821 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g00646 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g281700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41821.1 sequence type=CDS gene model=Glyma09g41821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCAATAAATCAGATCCCAAAGCTGGTGCTACTGCTGTGCCACCTCCCCGAATTGGGAAGAGAGAGGGTGAGAATGAAGATGAGCAGCAAGTCAATGCAAAGAAGCATAAGAGACATGAGGTTGCAGAGGAGCAAAGGATTATGGATGAAATTGTTTCAGATGATTCCTTTGAAGATTTTGAACCAGATAAGAATCCTGAAGCTAAAAAAGACTCCCTCAGTAAACAGGAGAAGAAAGGCAAACCTGATAGTGCTAACTGTTCCGGTTCTTTGGAGTCATTGGCTGATGGTTCTGAGGAGGGTAAAGGTAATATGGATATTGATGAGGGTAATCATTCTGAAGAATGTAATGAAGAAACACTAGAGAAGATGCAAGTTTTGCCTGTAAAAAGTTCAGAGAACAGTGAGAAAGGAATTGAGGAAAAAGACCCTAAAGCTCCTCAAGAAAATCCTAAAATGCTAGCTACACCAAATGAACGAAATGCTGGATCGAAGACAATAGTTACTAGAAACTTGTCATACAGTGTGGAACGAGCTGATTTGGAAAATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATGCTGAAGGGAGGTTTAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAACGCTCTTCAGTTAAATAATACAGAATTGTTAAGATGTCGAATCAGAGTTGTTATAGCTCCACAAAAGAATAAGCATAGAAGTTTCCATGTTATTTCTAGCAACTCGAGTCACTCATTTCAAAGGAGTGAAGGAACTCAGCCTGTGAAAGGTTCAGAGATTTCAGGGGACTGTGAACAAGAAACTGAGCCAAAACTAATTGCTACTTGCAAAGAACCAAGTGCTGCATCAAAGACAATATATGCTAAAAACTTGGCATACAGTATGGAGCAGGATGATATGGAATATCTTTTCAAAAATTGTGGAGAAATTGTTAGTATCCGCCTACATACAGATCATAACAGGCGGTTTAAAGGCTATGGACATGTTGAGTTTGCAACCACAGAAGCTGCACAAAAAGCTCTTGAATTGAATAATACAGTATATCTGGGACGTCGTGTTGGAGTTTTTATAGCTAAAGGAAAGGGTGAATATACCTCCAATAGAAGCAACTGGAGCAAGTCATTCCACCAGAGTGAACAGACTAAGCCCATCAAAAGTACAGAGAGTTCAGAGTACTGTGAGGAAGAGGTTGAGGGAAAAGCCTCCAATAGTTCTTGGGAAAGTTCTAAAAGAGTAGCTACTTTGAAAGAACAAAATGCTCCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGAATGTGGAAAAATTGTTGATGTTCATCTACATAGGAATCCTGATGGGAGGTTAAATGGCTTTGGACAAGTTGAGTTTGCAACAGCAGAAGCTGCAAAAAAAGCTCTTGAGTTGCATAATACAGAATTGTTGAGACGTCCCATTGGAGTTGATTTGGCTGAAGAAAAAGGTGAATATACCTACAGTAGAAGCAACTGGAGCAACTCATTCCAGAAGTGTGAAAGAGATCAGTCTCCAACTGTATTTGTGACGGGTTTTGATAGTTCCCTTCCGGCAGAAAAGATAAAAGCTAGCCTAGAAGAACATTTTGGTTCTTGTGGAGAGATTCAAAGGATATCAATTCCGACATTTCATGATTCTGGTGCTGTTAAGGGGTTTGCTCACTTGGGGTTCAAGGATGTTGTCAGTGTGAGGAAAGCTCTACATCTTGATCAAAATGAGTTAGGAGGTTTCCACTTGAGAGTCGAAAAAGCAAAGCCTCGACGTGAAAACCAGGGTATAGGTGGTGGTAGAGGTGGTGGTGGTGGTCATCAGTTTGGTGGAAGGGATGGAAGTGGCTATACCAGCAGAATGGGTTGGGGACGAAGTGGTGGTGGTGGGTGGCATTCTCTTCATTTTTCTGATGAAGGCACAGGGAGTTGTTTAAGGGAGATGATAATAAATATGGGTCTTAGAAATTGGTTTTAA
>Glyma09g41821.1 sequence type=predicted peptide gene model=Glyma09g41821 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNKSDPKAGATAVPPPRIGKREGENEDEQQVNAKKHKRHEVAEEQRIMDEIVSDDSFEDFEPDKNPEAKKDSLSKQEKKGKPDSANCSGSLESLADGSEEGKGNMDIDEGNHSEECNEETLEKMQVLPVKSSENSEKGIEEKDPKAPQENPKMLATPNERNAGSKTIVTRNLSYSVERADLENLFKECGEIVDVRLHTDAEGRFRGFGHVEFATAEAAQNALQLNNTELLRCRIRVVIAPQKNKHRSFHVISSNSSHSFQRSEGTQPVKGSEISGDCEQETEPKLIATCKEPSAASKTIYAKNLAYSMEQDDMEYLFKNCGEIVSIRLHTDHNRRFKGYGHVEFATTEAAQKALELNNTVYLGRRVGVFIAKGKGEYTSNRSNWSKSFHQSEQTKPIKSTESSEYCEEEVEGKASNSSWESSKRVATLKEQNAPSKTIYVKNLSYRVERADMENLFKECGKIVDVHLHRNPDGRLNGFGQVEFATAEAAKKALELHNTELLRRPIGVDLAEEKGEYTYSRSNWSNSFQKCERDQSPTVFVTGFDSSLPAEKIKASLEEHFGSCGEIQRISIPTFHDSGAVKGFAHLGFKDVVSVRKALHLDQNELGGFHLRVEKAKPRRENQGIGGGRGGGGGHQFGGRDGSGYTSRMGWGRSGGGGWHSLHFSDEGTGSCLREMIINMGLRNWF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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