|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G38450 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:16102016-16102683 FORWARD LENGTH=138 | SoyBase | E_val: 1.00E-43 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
PTHR11102 | Panther | SEL-1-LIKE PROTEINS | JGI | ISS | |
PTHR11102:SF18 | Panther | HCPA PROTEIN | JGI | ISS | |
PF08238 | PFAM | Sel1 repeat | JGI | ISS | |
UniRef100_C6T4R5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4R5_SOYBN | SoyBase | E_val: 3.00E-66 | ISS |
UniRef100_Q10MR3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10MR3_ORYSJ | SoyBase | E_val: 4.00E-30 | ISS |
Glyma09g41640 not represented in the dataset |
Glyma09g41640 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.09g280000 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41640.1 sequence type=CDS gene model=Glyma09g41640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGCAGCAGTGGGATTGAGAGCACGGGGGGGCGTGCGCCACTGTCAGGGGTGGTGGCAGATTGTGTGAAGCGGTGGTTCAAAGACACTCTGAAGGAGGCTAAGGCAGGTGATGTTAACATGCAGGTCTTGGTTGGTCAGATGTACTATCATGGCTATGGTGTTCCCAGAGATGCTCAGAAGGGAAGAATTTGGCTGACTAAAGCGTCGAGGGTTAGGTCTTCAGTTTGGAGAGTTGGTGGTAAACGTCCAGGTTATAATGCAAGCGACTCTGAGTCTGACGAAGAAGAAGATTCTTAA
>Glyma09g41640.1 sequence type=predicted peptide gene model=Glyma09g41640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSSGIESTGGRAPLSGVVADCVKRWFKDTLKEAKAGDVNMQVLVGQMYYHGYGVPRDAQKGRIWLTKASRVRSSVWRVGGKRPGYNASDSESDEEEDS*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||