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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56190 | AT | Annotation by Michelle Graham. TAIR10: alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289 | SoyBase | E_val: 4.00E-101 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: soluble NSF attachment protein activity | SoyBase | N/A | ISS |
| KOG1586 | KOG | Protein required for fusion of vesicles in vesicular transport, alpha-SNAP | JGI | ISS | |
| PTHR13768 | Panther | SOLUBLE NSF ATTACMENT PROTEIN (SNAP) | JGI | ISS | |
| PTHR13768:SF8 | Panther | ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN (SNAP-ALPHA) | JGI | ISS | |
| PF02071 | PFAM | Aromatic-di-Alanine (AdAR) repeat | JGI | ISS | |
| UniRef100_G7KW03 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-soluble NSF attachment protein n=1 Tax=Medicago truncatula RepID=G7KW03_MEDTR | SoyBase | E_val: 5.00E-133 | ISS |
| UniRef100_I1L752 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L752_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g41590 not represented in the dataset |
Glyma09g41590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g279400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41590.2 sequence type=transcript gene model=Glyma09g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAATATTGTTATAACGTAACTTAAGTGAGTGTATGTGATTCAACCCCTAAATATGGAGGCACATTAATTACCTGTGATTTAGAAGAGAAAAAAAGTTGCATTAATTACTTATTATTTAGAAGAAAAAAATAATCAGCAATGAGCAGCACAAAGACGATGCATTACGCAAAGTGGTTTTGACGCAACAGCGTTTATGATGACCTTTTGTGTTGGCAAAGGGTGATGACGCAGTGAAGTGAAAGCAGCAACAGCAATGGGCGATCACATAGCGAAGGGACAAGAACTGGCCAAGAGAGCGGAGAACAAGCTCCATGCTTGTTGCCCCTTGTTCGGGTCCAACTTGGAAGACGCTGCCGAATTGTTCCACAAATCCGCCACTTCCTTCAAACTCGCCAAATCATGGGACAAGGCGGCCTCACTCTTCGTCAAATCCGCTAAATGTCACTTGAAGTTGGATAGCAAGTATGATGCTGCAAATGCTTATGTGGATGCTGCACATTGCTACAAGAAAACTTCCACATCAGGAGCTATTTCCTGCTTAAATAAAGCTGTGACTATCTTCACTGAGATTGGTAGGCACATCATGGCTGCTAAGTATTCAAAGGAAATTGGCGAGTTATATGAGCTTGATCAAGACATAGAACATGCTAGATCTTATTATGAGAGGGCTGCTGAACTTTTTGAAATTGGGGATGCAGCAACTTCTGTGATCCAGTGCAAAGTTAAAGTTGCACAATTTTGTGCCCAGCTTCAACAATATCAGAAGGCAATTAAGATTTATGAAGATATTGCCCGGCAATCACTGGATAGTAACTTGTTGAAATATGGAGTTAGAGGGCATCTTCTTAATTCTGGCCTTTGCCAGCTTGTCCAAGGGGATTTTGTTGCAATTACCAACTCTTTGGAGCGCTATCAGGACTTGGATCTGACATTCTCCAGAACCCGTGAATACAAATTTTTGGCTGATTTGTCTGCTTCAATTGATGAGGGAGATGTTGAAAAGTTTACTAGAGTAGTGAAGGAGTTTAATAGCATAACCCCATTGGAATCTTGGAAGTCAACCCTTTTGTTGAGAGTAAAGGATGCTATGAAAGTAAAAGAGATGGAAGATGATGATTTGACATGAATCAATGACAACTGAATTTTCTGCCAATTAAGTTACTCTCAGCTTTGTAAATGCCACTGGTATGGATATTATTTTTGCCATGGTTTGATGGTTTTTCTTATTACTATTTGTAATTTGTATTACTAAAAGCAGAAGGTCATCTGTGCATCATGCCTGTATATGCCCAAAAATTGACAAAATTTGTTCTCCAAACCTTTATTCCTGAGCTTTAGAAGGGATAAGATCTAATTTACAATGTTCATTGGCTGTTGTATTTTTGTATACTATGTCCTGAAATTCACAATGGAAATTTATCAAGTGCTTTTAAGAAAATTGAGTGGCTGTT
>Glyma09g41590.1 sequence type=CDS gene model=Glyma09g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTGTTGCCCCTTGTTCGGGTCCAACTTGGAAGACGCTGCCGAATTGTTCCACAAATCCGCCACTTCCTTCAAACTCGCCAAATCATGTATGTATGTCTCTTTCATTCGGGTTCGAACCCACCATCTCTCCAATCAATGCTTACACTCTTTCAGGGGACAAGGCGGCCTCACTCTTCGTCAAATCCGCTAAATGTCACTTGAAGTTGGATAGCAAGTATGATGCTGCAAATGCTTATGTGGATGCTGCACATTGCTACAAGAAAACTTCCACATCAGGAGCTATTTCCTGCTTAAATAAAGCTGTGACTATCTTCACTGAGATTGGTAGGCACATCATGGCTGCTAAGTATTCAAAGGAAATTGGCGAGTTATATGAGCTTGATCAAGACATAGAACATGCTAGATCTTATTATGAGAGGGCTGCTGAACTTTTTGAAATTGGGGATGCAGCAACTTCTGTGATCCAGTGCAAAGTTAAAGTTGCACAATTTTGTGCCCAGCTTCAACAATATCAGAAGGCAATTAAGATTTATGAAGATATTGCCCGGCAATCACTGGATAGTAACTTGTTGAAATATGGAGTTAGAGGGCATCTTCTTAATTCTGGCCTTTGCCAGCTTGTCCAAGGGGATTTTGTTGCAATTACCAACTCTTTGGAGCGCTATCAGGACTTGGATCTGACATTCTCCAGAACCCGTGAATACAAATTTTTGGCTGATTTGTCTGCTTCAATTGATGAGGGAGATGTTGAAAAGTTTACTAGAGTAGTGAAGGAGTTTAATAGCATAACCCCATTGGAATCTTGGAAGTCAACCCTTTTGTTGAGAGTAAAGGATGCTATGAAAGTAAAAGAGATGGAAGATGATGATTTGACATGA >Glyma09g41590.2 sequence type=CDS gene model=Glyma09g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCGATCACATAGCGAAGGGACAAGAACTGGCCAAGAGAGCGGAGAACAAGCTCCATGCTTGTTGCCCCTTGTTCGGGTCCAACTTGGAAGACGCTGCCGAATTGTTCCACAAATCCGCCACTTCCTTCAAACTCGCCAAATCATGGGACAAGGCGGCCTCACTCTTCGTCAAATCCGCTAAATGTCACTTGAAGTTGGATAGCAAGTATGATGCTGCAAATGCTTATGTGGATGCTGCACATTGCTACAAGAAAACTTCCACATCAGGAGCTATTTCCTGCTTAAATAAAGCTGTGACTATCTTCACTGAGATTGGTAGGCACATCATGGCTGCTAAGTATTCAAAGGAAATTGGCGAGTTATATGAGCTTGATCAAGACATAGAACATGCTAGATCTTATTATGAGAGGGCTGCTGAACTTTTTGAAATTGGGGATGCAGCAACTTCTGTGATCCAGTGCAAAGTTAAAGTTGCACAATTTTGTGCCCAGCTTCAACAATATCAGAAGGCAATTAAGATTTATGAAGATATTGCCCGGCAATCACTGGATAGTAACTTGTTGAAATATGGAGTTAGAGGGCATCTTCTTAATTCTGGCCTTTGCCAGCTTGTCCAAGGGGATTTTGTTGCAATTACCAACTCTTTGGAGCGCTATCAGGACTTGGATCTGACATTCTCCAGAACCCGTGAATACAAATTTTTGGCTGATTTGTCTGCTTCAATTGATGAGGGAGATGTTGAAAAGTTTACTAGAGTAGTGAAGGAGTTTAATAGCATAACCCCATTGGAATCTTGGAAGTCAACCCTTTTGTTGAGAGTAAAGGATGCTATGAAAGTAAAAGAGATGGAAGATGATGATTTGACATGA
>Glyma09g41590.1 sequence type=predicted peptide gene model=Glyma09g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVAPCSGPTWKTLPNCSTNPPLPSNSPNHVCMSLSFGFEPTISPINAYTLSGDKAASLFVKSAKCHLKLDSKYDAANAYVDAAHCYKKTSTSGAISCLNKAVTIFTEIGRHIMAAKYSKEIGELYELDQDIEHARSYYERAAELFEIGDAATSVIQCKVKVAQFCAQLQQYQKAIKIYEDIARQSLDSNLLKYGVRGHLLNSGLCQLVQGDFVAITNSLERYQDLDLTFSRTREYKFLADLSASIDEGDVEKFTRVVKEFNSITPLESWKSTLLLRVKDAMKVKEMEDDDLT* >Glyma09g41590.2 sequence type=predicted peptide gene model=Glyma09g41590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDHIAKGQELAKRAENKLHACCPLFGSNLEDAAELFHKSATSFKLAKSWDKAASLFVKSAKCHLKLDSKYDAANAYVDAAHCYKKTSTSGAISCLNKAVTIFTEIGRHIMAAKYSKEIGELYELDQDIEHARSYYERAAELFEIGDAATSVIQCKVKVAQFCAQLQQYQKAIKIYEDIARQSLDSNLLKYGVRGHLLNSGLCQLVQGDFVAITNSLERYQDLDLTFSRTREYKFLADLSASIDEGDVEKFTRVVKEFNSITPLESWKSTLLLRVKDAMKVKEMEDDDLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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