Glyma09g41560 - SoyBase

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Report for Sequence Feature Glyma09g41560

Feature Type:	gene_model
Chromosome:	Gm09
Start:	46228129
stop:	46230331
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01750	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF567) \| chr5:290034-291109 FORWARD LENGTH=217	SoyBase	E_val: 1.00E-97	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04525	PFAM	Protein of unknown function (DUF567)	JGI		ISS
UniRef100_I1L749	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L749_SOYBN	SoyBase	E_val: 1.00E-157	ISS
UniRef100_Q9ZQR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein LURP1 n=1 Tax=Arabidopsis thaliana RepID=LURP1_ARATH	SoyBase	E_val: 1.00E-72	ISS

Expression Patterns of Glyma09g41560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g41560

Paralog	Evidence	Comments
Glyma18g44120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g41560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g279000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma09g41560

Limit To All Plant Sequences

>Glyma09g41560.2   sequence type=transcript   gene model=Glyma09g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAATTAAAAAAAACCAATTAAGCAACCAAGTGTAATGCGCGTCAACAAGAAAATAAAGAAAAACAAAAGCGCGTGGCAACCCTACACGCCATTCAGGTTTTTTCTTCTTTCTTTTATTCAGGTTTGATATAAGAAAGCTTCACCCATCTATTCTTCTTACATATCACAAAACAACATCACTCTCACAAACGGAAACTAAACTACGTTTTTTATTTTTTCCAGACAATAATACTTTAATATTTGAGTGTGATCGATGGCATACCCAAACCCTTATCCGGCTCAGCCCTATCCCTCCGCCTCCGCGCCGATGCCGGCGGTTCCCTCCGCCGTGATCGGCCCCCAGTTCTGCGCGCCGTACCCGGTGGATCTGGCGGTGGTGAAGAAGGTGATGACCATCTCTGACAACTTCGTTGTCACCGACGTCAACGGCAACATCGTATTCAAAGTTAAGGGATCGCTCGCGACCCTCCGTGACCGCCGCGTCCTCCTCGACGCCGCCGGCAACCCCCTCGTCACCCTTCGCCGGAAGATAATGACGGCACATGATCGATGGCAAGCTTTTAGGGGTGAAAGCACAGATGCCAAAGATCTAATCTTTACTCTGAAGCGGTCGTCCCTTATCCAGTTTAAGACCAAATTACATGTGTTTTTGGCCAATAACACCAAAGAAGATGTTTGTGACTTTAAGGTCAAAGGTAGTTGGTTGGAACGATCCTGCGTTGTTTATGCTGGTGAATCTAACAACATCGTTGCCCAGGTAAAACGATCTCCTCTGTTTAAATAACCATAACAATCTCTCTCTCTCTTTTTTCCTTCTTTTACCAAAAATATAATCGGTTTTAATCAACTACTTTCAGTATTTATTCAAACAATTTAATTAGAATGTACTTTACAATGCCATTTGATCTTAGATTATTAGTAAGGTTGCTAACTTTTATATAAATTAAACTCAATATATTTTGTGGGAATGATATTG

Coding sequences of Glyma09g41560

Limit To All Plant Sequences

>Glyma09g41560.1   sequence type=CDS   gene model=Glyma09g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATACCCAAACCCTTATCCGGCTCAGCCCTATCCCTCCGCCTCCGCGCCGATGCCGGCGGTTCCCTCCGCCGTGATCGGCCCCCAGTTCTGCGCGCCGTACCCGGTGGATCTGGCGGTGGTGAAGAAGGTGATGACCATCTCTGACAACTTCGTTGTCACCGACGTCAACGGCAACATCGTATTCAAAGTTAAGGGATCGCTCGCGACCCTCCGTGACCGCCGCGTCCTCCTCGACGCCGCCGGCAACCCCCTCGTCACCCTTCGCCGGAAGATAATGACGGCACATGATCGATGGCAAGCTTTTAGGGGTGAAAGCACAGATGCCAAAGATCTAATCTTTACTCTGAAGCGGTCGTCCCTTATCCAGTTTAAGACCAAATTACATGTGTTTTTGGCCAATAACACCAAAGAAGATGTTTGTGACTTTAAGGTCAAAGGTAGTTGGTTGGAACGATCCTGCGTTGTTTATGCTGGTGAATCTAACAACATCGTTGCCCAGATGCATAAAAAGCACACGGTTCAGAGTATTTTGATTGGGAAAGACCATTTCATGGTCACGGTTTATCCCAACATTGATTATGCGTTCATAGTGGCGCTAATCGTGATTCTTGACGAGATTAACGACGATGAGAAGGAAGATTAG

>Glyma09g41560.2   sequence type=CDS   gene model=Glyma09g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATACCCAAACCCTTATCCGGCTCAGCCCTATCCCTCCGCCTCCGCGCCGATGCCGGCGGTTCCCTCCGCCGTGATCGGCCCCCAGTTCTGCGCGCCGTACCCGGTGGATCTGGCGGTGGTGAAGAAGGTGATGACCATCTCTGACAACTTCGTTGTCACCGACGTCAACGGCAACATCGTATTCAAAGTTAAGGGATCGCTCGCGACCCTCCGTGACCGCCGCGTCCTCCTCGACGCCGCCGGCAACCCCCTCGTCACCCTTCGCCGGAAGATAATGACGGCACATGATCGATGGCAAGCTTTTAGGGGTGAAAGCACAGATGCCAAAGATCTAATCTTTACTCTGAAGCGGTCGTCCCTTATCCAGTTTAAGACCAAATTACATGTGTTTTTGGCCAATAACACCAAAGAAGATGTTTGTGACTTTAAGGTCAAAGGTAGTTGGTTGGAACGATCCTGCGTTGTTTATGCTGGTGAATCTAACAACATCGTTGCCCAGGTAAAACGATCTCCTCTGTTTAAATAA

Predicted protein sequences of Glyma09g41560

Limit To All Plant Sequences

>Glyma09g41560.1   sequence type=predicted peptide   gene model=Glyma09g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPNPYPAQPYPSASAPMPAVPSAVIGPQFCAPYPVDLAVVKKVMTISDNFVVTDVNGNIVFKVKGSLATLRDRRVLLDAAGNPLVTLRRKIMTAHDRWQAFRGESTDAKDLIFTLKRSSLIQFKTKLHVFLANNTKEDVCDFKVKGSWLERSCVVYAGESNNIVAQMHKKHTVQSILIGKDHFMVTVYPNIDYAFIVALIVILDEINDDEKED*

>Glyma09g41560.2   sequence type=predicted peptide   gene model=Glyma09g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYPNPYPAQPYPSASAPMPAVPSAVIGPQFCAPYPVDLAVVKKVMTISDNFVVTDVNGNIVFKVKGSLATLRDRRVLLDAAGNPLVTLRRKIMTAHDRWQAFRGESTDAKDLIFTLKRSSLIQFKTKLHVFLANNTKEDVCDFKVKGSWLERSCVVYAGESNNIVAQVKRSPLFK*

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