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Report for Sequence Feature Glyma09g41550

Feature Type:gene_model
Chromosome:Gm09
Start:46213954
stop:46222902
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g41550
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35800AT Annotation by Michelle Graham. TAIR10: RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839 SoyBaseE_val: 0ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0006366GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005665GO-cc Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003899GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0260 KOG RNA polymerase II, large subunit JGI ISS
PTHR19376Panther DNA-DIRECTED RNA POLYMERASE JGI ISS
PTHR19376:SF14Panther DNA-DIRECTED RNA POLYMERASE JGI ISS
PF00623PFAM RNA polymerase Rpb1, domain 2 JGI ISS
PF04983PFAM RNA polymerase Rpb1, domain 3 JGI ISS
PF04990PFAM RNA polymerase Rpb1, domain 7 JGI ISS
PF04992PFAM RNA polymerase Rpb1, domain 6 JGI ISS
PF04997PFAM RNA polymerase Rpb1, domain 1 JGI ISS
PF04998PFAM RNA polymerase Rpb1, domain 5 JGI ISS
PF05000PFAM RNA polymerase Rpb1, domain 4 JGI ISS
PF05001PFAM RNA polymerase Rpb1 C-terminal repeat JGI ISS
UniRef100_I1L748UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Glycine max RepID=I1L748_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1L748UniRef Annotation by Michelle Graham. Best UniRef hit: DNA-directed RNA polymerase n=1 Tax=Glycine max RepID=I1L748_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma09g41550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma09g41550 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g278900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma09g41550
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g41550
>Glyma09g41550.1   sequence type=CDS   gene model=Glyma09g41550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTCGATTCCCTTTCTCCCCAGCTGAGGTCGCCAAAGTTGCCACGGTTCAGTTTGGAATTATCAGTCCCGACGAGATCAGGCAAATGTCTGTGGTGCAAATCGAGCACGGTGAGACAACCGAGAGAGGGAAGCCGAAGATCGGAGGATTGAGCGACCCTCGGCTCGGAACTATTGACAGAAAGCTCAAGTGTGACACTTGTACGGGCAGTATGGCTGAGTGCCCTGGCCATTTTGGCCACTTGGAGCTTGCCAAGCCAATGTTCCATATTGGGTTTTTGAAGACTGTATTAGCTATAATGCGTTGTGTTTGCTTCAACTGCTCCAAAATTCTAGCTAATGAGGATGATCACAAGTTCAAGCTAGCTTTAAGAATCAGGAATCCCAAAAATAGGCTGAGAAAGATTCTGGATGCCTGCAAAAACAAAAGCAAGTGCGAAGGGGGAGATGATATTGACATTCATGGTAAAGATACCGGGGAGCCGGTTAAAAAGAGTCGCGGTGGCTGCGGTGCTCAGCAGCCGAAGATTACTATTGAGGGGATGAAAATAAATGCAGAGTATAAAGCTCAGAGGAAGAAAAGTGATGACCAAGAACAGCTTCCCGAACCCGTGGAAAGGAAACAGACTCTTTCTGCAGAAAGGGTTCTTAGTGTTCTGAAAAGGATAAGCGACGAGGACTGTCAGTTGTTGGGCTTGAATCCTCAGTACGCTCGTCCTGACTGGATGATTTTACAAGTTCTTCCAATTCCTCCTCAACCTGTTAGGCCTTCTGTAATGATGGACACATCCTCCAGGAGTGAGGATGATTTAACTCACCAACTGGCCATGATCATCAGGCACAATGAGAATCTGAAGAGACAGGAGAAGAATGGATCTCCTGCACATATTATTTCCGAGTTTGTGCAGTTATTGCAGTTCCACGTAGCAACATATTTTGATAATGAGTTACCTGGATTGCCAAGGGCTACTCAGAGATCTGGAAGGCCAATCAAATCAATATGTAGCAGGCTCAAGGCAAAAGAAGGCCGGATTAGAGGTAACTTGATGGGTAAAAGAGTTGATTTTTCTGCTCGAACAGTCATTACACCTGATCCAACTATCAACATTGATCAATTGGGAGTACCATGGAGTATTGCGTTGAATCTAACATACCCTGAGACTGTGACTCCATATAACATTGAAAGGTTGAAGGAACTTGTTGAGTATGGACCCCATCCTCCACCTGGAAAAACTGGTGCCAAGTATATCATTCGTGATGACGGACAAAGACTTGATCTCAGATATTTAAAGAAAAGCAGTGATCACCATTTGGAGCTTGGCTACAAGGTCGAGCGTCATTTGAATGATGGAGACTTTGTTCTCTTCAATCGTCAGCCTAGTCTTCATAAAATGTCTATCATGGGACACAGAATCAAAATCATGCCTTATTCTACTTTCCGGCTTAACTTGTCCGTAACTTCACCATATAATGCTGATTTTGACGGGGACGAAATGAATATGCATGTTCCTCAGAGTTTAGAAACCAGAGCTGAGGTGTTAGAGCTGATGATGGTGCCTAAATGCATTGTGTCACCACAGTCAAACAAGCCAGTGATGGGAATTGTCCAAGATACACTTCTAGGATGCAGGAAAATCACCAAGAGAGACACTTTCATCACAAAGGATGTTTTTATGAACATATTGATGTGGTGGGAAGATTTTGATGGGAAAGTTCCTGCTCCTACAATATTGAAGCCAGAACCATTGTGGACAGGGAAACAAGTTTTCAATCTCATCATTCCTAAACAAATAAATCTAATTAGATTTTCGAGCTGGCATAGTGATGATGAACGGGGACCCATAACCCCTGGGGATACCATGGTTAGAATTGAAAAAGGGGAACTACTTACCGGAACACTTTGCAAAAAGACTCTTGGAGCATCCGCCGGAAGTCTCATTCATGTGATTTGGGAAGAGGTTGGCCCTGATGCAGCTCGGAAATTTCTTGGTCATACTCAGTGGCTTGTAAACTACTGGCTTTTGCAGAATGCTTTTAGCATGGGAATTGGTGATACAATAGCTGATGCTTCCACTATGGAAGCCATAAATCAGACTATTTCATTAGCTAAGGAGAAAGTGAAACAACTTATCAGGGATGCTCAAGAGAAGAAGTTGGAGGCCGAACCTGGTCGGACAATGATGGATTCATTTGAAAATAGAGTGAACCAGACTCTAAATAAAGCTCGTGATGATGCTGGAAACAGTGCTGGAAATAGTTTATCTGAGAGCAACAATCTGAAAGCAATGGTGACAGCTGGTTCGAAAGGAAGTAACATCAACATATCTCAAATGACTGCTTGTGTGGGGCAACAGAACGTTGAGGGGAAGCGAATTCCATACGGATTCGTAGACCGGACATTGCCTCACTTCACAAAAGATGATCATGGGCCTGAAAGTCGTGGCTTTGTGGAGAACTCATATCTACGTGGACTGACCCCTCAAGAGTTCTTTTTCCATGCCATGGGTGGTAGGGAAGGTCTTATTGATACTGCCGTGAAGACCTCCGAAACCGGGTACATTCAGAGGCGACTCGTGAAGGCTATGGAGGACATCATGCTTAAATATGATGGGACAGTTAGAAACTCTTTGGGAGACGTCATACAATTTCTCTACGGAGAAGATGGTATGGACGCTATTTGGATTGAAACACAGAAGCTGGATACCCTTAAAATGAAGAAAACAGAATTTGATAGGGTGTTTAGGTATGAATTTGACGAGGAAAACTGGAAGCCTAATTACATGCTTCAAGAGCCTGTAGAAGACTTGAAAACCATCAGAGAGTTTCGTAATGTGTTTGAGGCAGAAGTTCAAAAGCTTGAAGCTGATAGACATCAACTCGCAATAGAGATAGCCTCTAATGGTGACAATTCTCTGCCACTGCCTGTTAACCTCAAGAGGCTTATCTGGAATGCTCAGAAGACATTTAAGGTTGACTTCCGAAGGCCTTCTGATATGCATCCAATGGAAATTGTGGAAGCCATCGATAAGCTCCAGGAGCGGCTTAAGGTTGTTCCCGGCGAGGACGCCTTGAGTCAAGAAGCTCAAAAGAATGCTACTCTCCTCTTCAATATTCTGCTCCGCAGCACTTTCGCCAGTAAAAGGGTCTTGGAGGAATACAGGCTTTCTCGCGAGTCATTTGAGTGGGTAGTCGGAGAAATAGAATCAAGGTTCTTGCAGTCGCTTGTGGTCCCCGGAGAAATGATTGGTGTCGTGGCTGCACAATCAATTGGTGAACCTGCTACTCAGATGACTCTCAACACTTTCCACTTTGCCGGTGTCAGCGCAAAGAACGTTACTCTTGGTGTTCCTAGGTTAAGGGAACTCATTAATGTCGCCAAGAGTATTAAAACGCCTTCTCTCTCTGTGTACTTGAAACCTGATGCTGGTAAGACTAAAGAGAGAGCCAAGACTGTGCAGTGTGCTTTAGAATATACCACTCTCAGGAGTGTCACTCAAGCTACAGAGGTGTGGTATGATCCAGACCCGATGAGTACAATAATTGAAGAGGATGTGGATTTTGTCATGTCCTACTATGAAATGCCCGATGAAGAAGTTGCTCTTGAAAAAATCTCACCTTGGTTGCTTCGCGTGGAGCTGAATCGTGAAATGATGATTAACCTTGAATTTGATGATGATTTGAGTTGTATATTTAACGATGACAATGCTGAAAAACTTATACTTCGTATCCGTATAATGAATGATGATGCACCAAAGGGTGAGGTTCAGGATGAATCCGCTGAAGATGATGTTTTCTTGAAGAAAATAGAAACCAACATGCTGACTGAAATGACTCTACGAGGAATCCCAGACATAAACAAGGTTTTTATAAAAAATGCGAAAGTTCAGAAGTTTGATGAGAACGAAGGTTTTAAGTCTAATGGGGAATGGATGCTTGATACCGAAGGTGTGAACCTGCTAGCTGTGATGTGCCATGAAGATGTTGACGCGACAAGGACAACAAGCAACCACTTGATTGAGGTTATTGAAGTTCTTGGTATTGAGGCAGTTAGGCGATCTCTACTGGATGAATTGAGAATTGTAATTTCGTTTGACGGTTCTTATGTAAATTACAGGCATTTGGCTATTCTATGTGAAACAATGACGTATAGGGGGCATTTAATGGCAATAACACGTCACGGCATCAACAGGAATGATACAGGGCCAATGATGAGATGCTCATTTGAAGAGACAGTTGATATTCTGCTTGATGCTGCAGCATATGCAGAGACTGATAGCTTGAGGGGAGTCACAGAAAACATAATCTTAGGGCAGCTCGCCCCCATTGGGACAGGCCAATGTGCCTTGTATCTTAATGATGGCATGCTGAAGAATGCCATTGAGCTACAACTGCCTAGTTATACAGATGGTCTTGATTTCGGTATCATGTCTGGAGCAACTCCATATCATGAAGGCACCATGATGTCTCCCAGTTATCTGTTGAGCCCCAATTTACGCCTGTCTCCTAGTTCGGATGCACAGTTTTCGCCTTATGTTGGCGGCATGGCGTTTTCTCCTTCTTCATCTCCTGGTTATAGTCCATCATCCCCCGGCTATAGTCCATCTTCGCCCGGGTACAGCCCCACGTCGCCCGGTTACAGTCCCACTTCCCCCGGTTACAGTCCCACCTCTCCAACTTATAGCCCTAGCTCTCCCGGATATAGTCCAACAAGTCCAGCTTATTCGCCTACATCTCCCAGCTACAGCCCCACCTCACCTGCATACAGCCCAACTTCTCCTGCATACAGCTCCACTTCACCTGCATACAGTCCTACTTCTCCATCATACAGCCCCACTTCACCTGCATATAGTCCTACTTCTCCATCATATAGCCTGACATCTCCTTCCTACAGTCCAACTTCACCCTCTTACAGCCCCACGTCTCCCTCATATAGTCCTACCTCTCCTGCATACAGCCCCACATCTCCCTCATATAGCCCAACATCTCCATCTTATAGTCCTACTTCCCCCAGTTACAATCCACAATCAGCAAAATATAGTCCTTCGTTAGCTTATTCTCCAAGCAGTCCAAGATTGTCTCCCACATCTCCAAACTATAGCCCGACGTCTCCCTCGTATTCACCAACATCTCCTTCTTATTCTCCATCAAGCCCAACATACAGTCCCAGCAGTCCATATAATTCTGGTGTGAGCCCGGACTATAGCCCAACTTCCCCCCAATTTAGTCCCAGTGCGGGTTACTCACCAAGTCAACCCGGTTACTCACCGTCGTCAACCAGCCAGGACACTCCACAAACTAGTGACAAGGATGAATGA
Predicted protein sequences of Glyma09g41550
>Glyma09g41550.1   sequence type=predicted peptide   gene model=Glyma09g41550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVRFPFSPAEVAKVATVQFGIISPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTIDRKLKCDTCTGSMAECPGHFGHLELAKPMFHIGFLKTVLAIMRCVCFNCSKILANEDDHKFKLALRIRNPKNRLRKILDACKNKSKCEGGDDIDIHGKDTGEPVKKSRGGCGAQQPKITIEGMKINAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPQYARPDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQEKNGSPAHIISEFVQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSLETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQINLIRFSSWHSDDERGPITPGDTMVRIEKGELLTGTLCKKTLGASAGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSMGIGDTIADASTMEAINQTISLAKEKVKQLIRDAQEKKLEAEPGRTMMDSFENRVNQTLNKARDDAGNSAGNSLSESNNLKAMVTAGSKGSNINISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMLKYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPNYMLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDAGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVMSYYEMPDEEVALEKISPWLLRVELNREMMINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKGEVQDESAEDDVFLKKIETNMLTEMTLRGIPDINKVFIKNAKVQKFDENEGFKSNGEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAAYAETDSLRGVTENIILGQLAPIGTGQCALYLNDGMLKNAIELQLPSYTDGLDFGIMSGATPYHEGTMMSPSYLLSPNLRLSPSSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPSYSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPTSPQFSPSAGYSPSQPGYSPSSTSQDTPQTSDKDE*






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