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Report for Sequence Feature Glyma09g41510

Feature Type:gene_model
Chromosome:Gm09
Start:46180715
stop:46193814
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08850AT Annotation by Michelle Graham. TAIR10: HEAT repeat ;WD domain, G-beta repeat protein protein | chr3:2686978-2694911 REVERSE LENGTH=1344 SoyBaseE_val: 0ISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009880GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1517 KOG Guanine nucleotide binding protein MIP1 JGI ISS
PTHR12848Panther FAMILY NOT NAMED JGI ISS
PTHR12848:SF5Panther SUBFAMILY NOT NAMED JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
UniRef100_G7KW32UniRef Annotation by Michelle Graham. Most informative UniRef hit: Regulatory-associated protein of mTOR n=1 Tax=Medicago truncatula RepID=G7KW32_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L744UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L744_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma09g41510 not represented in the dataset

Glyma09g41510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g44210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.09g278500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma09g41510.1   sequence type=CDS   gene model=Glyma09g41510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGGAGATTTGATGGCCTCTCGCTTTTCCCAATCCACAGTTCTCGTCGTTCCCACCTCTCACAACCACCTCGACGATTCCACCACCGCCTCCTCTTCCTCCTCTGCTGCCGCCGCCGTCGCCGCTCTTAACAACAACAGCAGCAGCAACGACGACGCCGATTTCGCGCACCGCCGCGACTCTGAAGCCGCCATCGCCATCATTAGCAGCGGCAACTACGCCGGGAATGCCGCCACCAGCATGGCCTACCTGCCCCACACCGTCGTCCTGTGCGAGCTCCGCCACGACGCCTTCGAGGCCGCCGTCCCCGCCGGCCCCTCCGACAGCGGCCTCGTCTCCAAGTGGCGACCTAAGGACAGAATGAAGACAGGATGTGTAGCTCTAGTATTATGTTTAAACATTAGTGTCGATCCACCAGATGTAATAAAGATATCCCCTTGTGCCAGAATGGAGTGCTGGATAGATCCTTTTTCTATGGCACCGCAAAAGGCATTGGAGTCAATTGGAAAAACTTTGAGCAGTCAGTATGAAAGATGGCAACCAAAGGCCCGCTATAAATGTCAACTTGATCCGACAGTGGATGAGGTGAAGAAGCTTTGTACTACTTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGAGTTATACACAGTATATTCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGCTTCATGAGTGGAGTGCTTCCAACTCCTCTGTGTCCCAAAGGGATTGCATTCTGCTTGCAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTATTTACATCTTGCCTTACAACACCTATAAAGATGGCATTGCGATGGTTTTGTACTCGTTCATTACTTCGTGAATCACTTGATTATTCACTTATAGACAAGATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGGGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCGTCTTTAGTTGAGGATCCTAATGCTGAATTTCAGCCTAGTACATTTTTCACTGAGCAGTTGACAGCATTTGAGGTATGGCTTGACCATGGTTCTGAACATAAGAAACCACCAGAACAGTTGCCTATAGTTCTTCAGGTTTTACTTAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCAGTAGATCTGGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGTCATGTCAGGTTGATCTAGTGAAGGATGGCGGTCATATCTATTTTATTAAGTTTCTTGATAGCATGGAAGCATATCCAGAGCAACGTGCAATGGCTGCTTTTGTTTTGGCTGTGATTGTGGATGGTCATAGACGAGGCCAAGAAGCTTGTATTGAAGCTGGTTTAATTCATGTCTGCTTAAAGCACCTTCAGAGTTCATGTCCTAATGATTCACAAACTGAACCCCTTTTCCTTCAGTGGCTTTGCCTGTGTCTGGGGAAATTGTGGGAAGACTTTTCAGAGGCACAAACAATCGGTTTGCAGGAAGATGCCACTACTATATTTGCTCCTCTACTGTCTGAACCCCAGCCAGAGGTTAGGGCATCTGCTGTTTTTGCACTAGGCACCCTTCTTGATGTGGGGTTTGATTCATGTAGAAGTGTTGGTGGAGATGAAGAATGTGATGATGATGATAAGTTTAGGGCTGAAGTTAGTATAGTTAAGAGTATGTTAGATGTTGCTTCAGATGGGAGTCCATTGGTGAGGGCAGAGGTAGCAGTGGCTCTAGCACGATTTGCTTTTGGCCACAACAAGCACCTGAAATCTATTGCTGCTGCATATTGGAAGCCTCAAGCTAATTCTTTGATTAATTCCTTACCTTCGTTGACTAATATAAAAGGTTCGGTTGGTGGATATGCTAAACAGAACCAACACATGCCTCATGGAAGTATTGTTTCTCCTCAAATTGGTCCTATCAGGGTTGGAAATGACAACTCTCCAGTGGTTCGAGATGGCCGCGTCTCTTCTAGCAGTCCTCTCGCTGGTTCAGGAATCATGCATGGGTCCCCATTGTCTGATGATTCATCTCATCATTCTGATTCAGGAATTCTGAATGATGGTTTCAGCAATGGAGTGGCTAACCACACTGGACCAAAGCCCTTTGACAATGCATTGTATTCACAATGTGTACTTGCTATGTGTACTTTGGCAAAGGATCCATCTCCACGCATTGCAAATCTTGGTCGCCGGGTACTGTCCATAATAGGTATTGAACAAGTGGTTGCAAAACCATTGAAGTCTAGTGGTGTTCGGACTGCTGAATCTACAGCTTCTCCACTGGCTCGTTCATCTTCTTGGTTTGACATGAATGGAGGACACTTGCCTCTGACCTTCAGAACTCCTCCAGTCAGTCCTCCTCGCCCAAGTTATATAACTCGAATGCGTCGAGTTTGTTCATTGGAGTTTAGGCCCCACCTGATGGATTCTCCAGACTCAGGATTAGCTGATCCACTCTTAGGTTCTGGTGGAGCTTCTGGGACTTCAGATCGAAGCTTTCTTCCACAATCAACTATATATAGTTGGAGTTGTGGGCACTTTTCCAAACCACTTTTAACTGCTGCAGATGATAGCGAAGAGGTATCAGCCAGAAGAGAAGAGAGGGAAAAATTTGCATTGGAGCACATAGCAAAATGCCAGCACTCTGCTGTTAGCAGGCTAACAAATCCAATTGCTAAATGGGACATAAAGGGTACACAAACAGCATTGCTGCAACCTTTCTCTCCTATAGTGATAGCTGCTGATGAGAATGAACGTATCAGGATATGGAACCATGAGGAGGCAACACTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATCTGATGGAAACATTCGGATTTGGAAAGATTATACTCTGAGGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAGGAATCTGAATGCAGTTGTTGATTGGCAACAACAATGTGGTTATCTGTATGCATCGGGTGAGATATCATCTATTATGCTATGGGATGTTGATAAAGAGCAGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTGGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTTCTGTCCGACTTTATGATGTCAGAACACCTGATATGCTCGTTTGTGGATTAAGGCCTCATACACAAAGAGTAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAATCATAGCAGTGCCTATCTTACTATTGAAGCTCATAGGGGTTCACTCACAGCTTTAGCAGTACATAGACATGCCCCAATTATTGCCAGTGGTTCAGCGAAACAACTCATTAAGGTCTTTAGCCTGGAGGGTGATCAACTAGGCACCATTCGATACTATCCTACCCTAATGGCCCAGAAAATTGGTTCTGTAAGCTGCCTCAATTTCCATCCATACCAAGTATTACTTGCTGCTGGTGCTGCAGATGCATGTGTTTGTATTTATGCTGATGACAACACTCAAGCTAGATGA

>Glyma09g41510.1   sequence type=predicted peptide   gene model=Glyma09g41510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHRRDSEAAIAIISSGNYAGNAATSMAYLPHTVVLCELRHDAFEAAVPAGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRDCILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRPNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCRSVGGDEECDDDDKFRAEVSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLTNIKGSVGGYAKQNQHMPHGSIVSPQIGPIRVGNDNSPVVRDGRVSSSSPLAGSGIMHGSPLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGIEQVVAKPLKSSGVRTAESTASPLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHSAVSRLTNPIAKWDIKGTQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDESLLLAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLYASGEISSIMLWDVDKEQLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRTPDMLVCGLRPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRYYPTLMAQKIGSVSCLNFHPYQVLLAAGAADACVCIYADDNTQAR*







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