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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G08850 | AT | Annotation by Michelle Graham. TAIR10: HEAT repeat ;WD domain, G-beta repeat protein protein | chr3:2686978-2694911 REVERSE LENGTH=1344 | SoyBase | E_val: 0 | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1517 | KOG | Guanine nucleotide binding protein MIP1 | JGI | ISS | |
| PTHR12848 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12848:SF5 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7KW32 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulatory-associated protein of mTOR n=1 Tax=Medicago truncatula RepID=G7KW32_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L744 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L744_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma09g41510 not represented in the dataset |
Glyma09g41510 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g44210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g278500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41510.1 sequence type=CDS gene model=Glyma09g41510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTGGGAGATTTGATGGCCTCTCGCTTTTCCCAATCCACAGTTCTCGTCGTTCCCACCTCTCACAACCACCTCGACGATTCCACCACCGCCTCCTCTTCCTCCTCTGCTGCCGCCGCCGTCGCCGCTCTTAACAACAACAGCAGCAGCAACGACGACGCCGATTTCGCGCACCGCCGCGACTCTGAAGCCGCCATCGCCATCATTAGCAGCGGCAACTACGCCGGGAATGCCGCCACCAGCATGGCCTACCTGCCCCACACCGTCGTCCTGTGCGAGCTCCGCCACGACGCCTTCGAGGCCGCCGTCCCCGCCGGCCCCTCCGACAGCGGCCTCGTCTCCAAGTGGCGACCTAAGGACAGAATGAAGACAGGATGTGTAGCTCTAGTATTATGTTTAAACATTAGTGTCGATCCACCAGATGTAATAAAGATATCCCCTTGTGCCAGAATGGAGTGCTGGATAGATCCTTTTTCTATGGCACCGCAAAAGGCATTGGAGTCAATTGGAAAAACTTTGAGCAGTCAGTATGAAAGATGGCAACCAAAGGCCCGCTATAAATGTCAACTTGATCCGACAGTGGATGAGGTGAAGAAGCTTTGTACTACTTGTCGTAAATATGCAAAGTCGGAAAGAGTTTTATTCCATTACAATGGGCATGGTGTGCCAAAACCAACTGCTAATGGTGAAATTTGGGTCTTCAATAAGAGTTATACACAGTATATTCCCTTACCTATCAATGAACTTGATTCCTGGCTGAAGACCCCATCAATTTATGTTTTTGATTGCTCTGCGGCTGGGATGATTGTGAATTCCTTCATTGAGCTTCATGAGTGGAGTGCTTCCAACTCCTCTGTGTCCCAAAGGGATTGCATTCTGCTTGCAGCATGTGAAGCACATGAGACTTTGCCTCAGAGTGCAGAATTCCCAGCTGATGTATTTACATCTTGCCTTACAACACCTATAAAGATGGCATTGCGATGGTTTTGTACTCGTTCATTACTTCGTGAATCACTTGATTATTCACTTATAGACAAGATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTCGAAATTTTCTACTTGCTGAGCGAATCATGCGATCTGCAAATTGTTCTCCTGTCTCTCACCCAATGTTACCTCCGACCCATCAGCATCATATGTGGGATGCATGGGACATGGCTGCTGAGCTCTGCCTCTCTCAACTTCCGTCTTTAGTTGAGGATCCTAATGCTGAATTTCAGCCTAGTACATTTTTCACTGAGCAGTTGACAGCATTTGAGGTATGGCTTGACCATGGTTCTGAACATAAGAAACCACCAGAACAGTTGCCTATAGTTCTTCAGGTTTTACTTAGTCAATGCCATCGGTTTCGGGCTTTAGTACTCCTTGGAAGGTTCCTTGATATGGGGCCATGGGCAGTAGATCTGGCATTATCTGTTGGAATATTTCCATATGTTCTAAAGCTGTTACAAACAACAACACCCGAACTACGCCAGATCCTTGTATTCATATGGACAAAGATTCTTGCACTTGACAAGTCATGTCAGGTTGATCTAGTGAAGGATGGCGGTCATATCTATTTTATTAAGTTTCTTGATAGCATGGAAGCATATCCAGAGCAACGTGCAATGGCTGCTTTTGTTTTGGCTGTGATTGTGGATGGTCATAGACGAGGCCAAGAAGCTTGTATTGAAGCTGGTTTAATTCATGTCTGCTTAAAGCACCTTCAGAGTTCATGTCCTAATGATTCACAAACTGAACCCCTTTTCCTTCAGTGGCTTTGCCTGTGTCTGGGGAAATTGTGGGAAGACTTTTCAGAGGCACAAACAATCGGTTTGCAGGAAGATGCCACTACTATATTTGCTCCTCTACTGTCTGAACCCCAGCCAGAGGTTAGGGCATCTGCTGTTTTTGCACTAGGCACCCTTCTTGATGTGGGGTTTGATTCATGTAGAAGTGTTGGTGGAGATGAAGAATGTGATGATGATGATAAGTTTAGGGCTGAAGTTAGTATAGTTAAGAGTATGTTAGATGTTGCTTCAGATGGGAGTCCATTGGTGAGGGCAGAGGTAGCAGTGGCTCTAGCACGATTTGCTTTTGGCCACAACAAGCACCTGAAATCTATTGCTGCTGCATATTGGAAGCCTCAAGCTAATTCTTTGATTAATTCCTTACCTTCGTTGACTAATATAAAAGGTTCGGTTGGTGGATATGCTAAACAGAACCAACACATGCCTCATGGAAGTATTGTTTCTCCTCAAATTGGTCCTATCAGGGTTGGAAATGACAACTCTCCAGTGGTTCGAGATGGCCGCGTCTCTTCTAGCAGTCCTCTCGCTGGTTCAGGAATCATGCATGGGTCCCCATTGTCTGATGATTCATCTCATCATTCTGATTCAGGAATTCTGAATGATGGTTTCAGCAATGGAGTGGCTAACCACACTGGACCAAAGCCCTTTGACAATGCATTGTATTCACAATGTGTACTTGCTATGTGTACTTTGGCAAAGGATCCATCTCCACGCATTGCAAATCTTGGTCGCCGGGTACTGTCCATAATAGGTATTGAACAAGTGGTTGCAAAACCATTGAAGTCTAGTGGTGTTCGGACTGCTGAATCTACAGCTTCTCCACTGGCTCGTTCATCTTCTTGGTTTGACATGAATGGAGGACACTTGCCTCTGACCTTCAGAACTCCTCCAGTCAGTCCTCCTCGCCCAAGTTATATAACTCGAATGCGTCGAGTTTGTTCATTGGAGTTTAGGCCCCACCTGATGGATTCTCCAGACTCAGGATTAGCTGATCCACTCTTAGGTTCTGGTGGAGCTTCTGGGACTTCAGATCGAAGCTTTCTTCCACAATCAACTATATATAGTTGGAGTTGTGGGCACTTTTCCAAACCACTTTTAACTGCTGCAGATGATAGCGAAGAGGTATCAGCCAGAAGAGAAGAGAGGGAAAAATTTGCATTGGAGCACATAGCAAAATGCCAGCACTCTGCTGTTAGCAGGCTAACAAATCCAATTGCTAAATGGGACATAAAGGGTACACAAACAGCATTGCTGCAACCTTTCTCTCCTATAGTGATAGCTGCTGATGAGAATGAACGTATCAGGATATGGAACCATGAGGAGGCAACACTACTGAACAGTTTTGATAATCATGATTTTCCTGACAAAGGAATTTCTAAGCTCTGCCTTGTAAATGAGCTTGATGAGAGCTTGCTTCTTGCTGCTTCATCTGATGGAAACATTCGGATTTGGAAAGATTATACTCTGAGGGGTAAACAAAAACTTGTCACTGCATTCTCTTCAATTCATGGTCATAAACCTGGTGTGAGGAATCTGAATGCAGTTGTTGATTGGCAACAACAATGTGGTTATCTGTATGCATCGGGTGAGATATCATCTATTATGCTATGGGATGTTGATAAAGAGCAGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTGGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTTCTGTCCGACTTTATGATGTCAGAACACCTGATATGCTCGTTTGTGGATTAAGGCCTCATACACAAAGAGTAGAAAAGGTTGTGGGGATTGGCTTTCAGCCTGGATTAGACCAAGGAAAGATTGTTAGCGCTTCTCAGGCTGGGGATATCCAATTTCTTGATATAAGAAATCATAGCAGTGCCTATCTTACTATTGAAGCTCATAGGGGTTCACTCACAGCTTTAGCAGTACATAGACATGCCCCAATTATTGCCAGTGGTTCAGCGAAACAACTCATTAAGGTCTTTAGCCTGGAGGGTGATCAACTAGGCACCATTCGATACTATCCTACCCTAATGGCCCAGAAAATTGGTTCTGTAAGCTGCCTCAATTTCCATCCATACCAAGTATTACTTGCTGCTGGTGCTGCAGATGCATGTGTTTGTATTTATGCTGATGACAACACTCAAGCTAGATGA
>Glyma09g41510.1 sequence type=predicted peptide gene model=Glyma09g41510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALGDLMASRFSQSTVLVVPTSHNHLDDSTTASSSSSAAAAVAALNNNSSSNDDADFAHRRDSEAAIAIISSGNYAGNAATSMAYLPHTVVLCELRHDAFEAAVPAGPSDSGLVSKWRPKDRMKTGCVALVLCLNISVDPPDVIKISPCARMECWIDPFSMAPQKALESIGKTLSSQYERWQPKARYKCQLDPTVDEVKKLCTTCRKYAKSERVLFHYNGHGVPKPTANGEIWVFNKSYTQYIPLPINELDSWLKTPSIYVFDCSAAGMIVNSFIELHEWSASNSSVSQRDCILLAACEAHETLPQSAEFPADVFTSCLTTPIKMALRWFCTRSLLRESLDYSLIDKIPGRPNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPVSHPMLPPTHQHHMWDAWDMAAELCLSQLPSLVEDPNAEFQPSTFFTEQLTAFEVWLDHGSEHKKPPEQLPIVLQVLLSQCHRFRALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQTTTPELRQILVFIWTKILALDKSCQVDLVKDGGHIYFIKFLDSMEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQSSCPNDSQTEPLFLQWLCLCLGKLWEDFSEAQTIGLQEDATTIFAPLLSEPQPEVRASAVFALGTLLDVGFDSCRSVGGDEECDDDDKFRAEVSIVKSMLDVASDGSPLVRAEVAVALARFAFGHNKHLKSIAAAYWKPQANSLINSLPSLTNIKGSVGGYAKQNQHMPHGSIVSPQIGPIRVGNDNSPVVRDGRVSSSSPLAGSGIMHGSPLSDDSSHHSDSGILNDGFSNGVANHTGPKPFDNALYSQCVLAMCTLAKDPSPRIANLGRRVLSIIGIEQVVAKPLKSSGVRTAESTASPLARSSSWFDMNGGHLPLTFRTPPVSPPRPSYITRMRRVCSLEFRPHLMDSPDSGLADPLLGSGGASGTSDRSFLPQSTIYSWSCGHFSKPLLTAADDSEEVSARREEREKFALEHIAKCQHSAVSRLTNPIAKWDIKGTQTALLQPFSPIVIAADENERIRIWNHEEATLLNSFDNHDFPDKGISKLCLVNELDESLLLAASSDGNIRIWKDYTLRGKQKLVTAFSSIHGHKPGVRNLNAVVDWQQQCGYLYASGEISSIMLWDVDKEQLVNSKSSSSDCSVSALAASQVHGGQFTAGFIDGSVRLYDVRTPDMLVCGLRPHTQRVEKVVGIGFQPGLDQGKIVSASQAGDIQFLDIRNHSSAYLTIEAHRGSLTALAVHRHAPIIASGSAKQLIKVFSLEGDQLGTIRYYPTLMAQKIGSVSCLNFHPYQVLLAAGAADACVCIYADDNTQAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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