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Report for Sequence Feature Glyma09g41490

Feature Type:gene_model
Chromosome:Gm09
Start:46164682
stop:46165803
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma09g41490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38400AT Annotation by Michelle Graham. TAIR10: alanine:glyoxylate aminotransferase 3 | chr2:16083779-16085974 FORWARD LENGTH=477 SoyBaseE_val: 2.00E-20ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008453GO-mf Annotation by Michelle Graham. GO Molecular Function: alanine-glyoxylate transaminase activity SoyBaseN/AISS
GO:0008483GO-mf Annotation by Michelle Graham. GO Molecular Function: transaminase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
PTHR11986Panther AMINOTRANSFERASE CLASS III JGI ISS
PTHR11986:SF23Panther AMINOTRANSFERASE JGI ISS
UniRef100_G7KX17UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alanine glyoxylate aminotransferase-like protein n=1 Tax=Medicago truncatula RepID=G7KX17_MEDTR SoyBaseE_val: 1.00E-21ISS
UniRef100_I1N358UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1N358_SOYBN SoyBaseE_val: 2.00E-23ISS

Expression Patterns of Glyma09g41490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g41490
ParalogEvidenceComments
Glyma18g44250 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g41490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma09g41490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma09g41490
>Glyma09g41490.1   sequence type=CDS   gene model=Glyma09g41490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAATCCTAAAATGTATTACCTGGTCAAAAGGGGAAACAGTAGAAGTTTATGAAAAGCCAACGTTAGGTATTCTATTTTATGGCCACCTAGCTATTAATTATTTTTTGAGCATTGCAATTGGTGCTGTTGTGACAACTCCTGAGATTGCCAAGGCCTTGACTTCGGCGGAAATCCTGTTTGCACTGCTGCAGGATTGGCTCTCCCCTTATAATTTTGTAGTTTTTGATAAATTTCTACCAATAATAGAGATTATGTCAAAAAAGTGTGATAGAGAATATATTACTATAATTGGGGATGTGAGAGGAATAGGCATGATGCTTGGAGTTGAACTTGTCAGTGATCGCGAACTTAAAACACCAGCACAAAATGAAACACTGCATGTGATGGACCAAATGAAAGCCATATTTTATAAAATTAGGAGTGTTGATTGGAAAGGGTGGCTATTATGGAAATGTATTCAGAATTACACCAAAGAAGATGCAGCCTCTGTGTGTTTCTTCCTTTTTTTTGTGGGTGCAGACTTCCTTGTGGATGCGATGGACTACACATTTTCCAAGTGTAAATAA
Predicted protein sequences of Glyma09g41490
>Glyma09g41490.1   sequence type=predicted peptide   gene model=Glyma09g41490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LILKCITWSKGETVEVYEKPTLGILFYGHLAINYFLSIAIGAVVTTPEIAKALTSAEILFALLQDWLSPYNFVVFDKFLPIIEIMSKKCDREYITIIGDVRGIGMMLGVELVSDRELKTPAQNETLHVMDQMKAIFYKIRSVDWKGWLLWKCIQNYTKEDAASVCFFLFFVGADFLVDAMDYTFSKCK*






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