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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51730 | AT | Annotation by Michelle Graham. TAIR10: saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213 | SoyBase | E_val: 8.00E-53 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1340 | KOG | Prosaposin | JGI | ISS | |
| PTHR11480 | Panther | SAPOSIN-RELATED | JGI | ISS | |
| PTHR11480:SF2 | Panther | ECDYSONE DEPENDENT GLYCOPROTEIN | JGI | ISS | |
| PF03489 | PFAM | Saposin-like type B, region 2 | JGI | ISS | |
| PF05184 | PFAM | Saposin-like type B, region 1 | JGI | ISS | |
| UniRef100_G7KX29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Saposin B domain-containing protein n=2 Tax=Medicago truncatula RepID=G7KX29_MEDTR | SoyBase | E_val: 1.00E-93 | ISS |
| UniRef100_I1L729 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L729_SOYBN | SoyBase | E_val: 1.00E-174 | ISS |
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Glyma09g41350 not represented in the dataset |
Glyma09g41350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g44441 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Glyma19g28800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g277100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41350.2 sequence type=transcript gene model=Glyma09g41350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTGCTTCCAATTAAAACCACTCAGAAAAATAGTATTTTTTTTTCTCTTTACTTGCCACCCACTAATCCTCAAAATTAAATTTTATCCCACTGGTCTTTTTTATTCCCATATCATGTGATGCATTCAACTATTGCATGTTGTTATCTTAATTGGCCTTGCTAGTTGCTACTACTTCACTTTCTATAATCTGTGTTGGAAGACATCATGGTTCAGCACTTCAATTTTCTTTTCTAGGGGGAGCATGAACTGAGTTGCAAGCTTTTTGGTTTGATTATATCAACTCAATTAAGAATTGTGCCATGTAACTTTTGAAGTCCATTAGGAACCATGGAGGGGAGAATGGGACTCTTGTTTCTTGTTGTATTGGGTGCTGCATGGGCTTGTGATGCTAGAGAACTGGCTAAACCTGATCTATTAAGCAAACTAAGCAGAAAACCAGATGCGTGTGCACTTTGTGAAGAATATTCTACTAAGGTACTTGATTATCTGAATGAAAACAAGACCCAGCAAGAGATCATTGACATCCTGCACAACATTTGCCACCAAACTTCCTCTTTTAAGCAGAAGTGCATTACTTTGGTGGACTATTATGCTCCTCTTTTCTTCTTAGAAATAGTTACAATCCAGCCTGGAGAATTCTGCCACAAGGTCAATCTCTGTCAGCTCATTACATATATTTCCTTGCTAGTTCAAGAAGATACCAGTGGGTTTTGCAAAGATACTGTTTCAACTCTATCGGCTAAGTTGAAAGACAGTGACACTAAGCTAGAGATAATTGAGACATCACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTGGAGTATGGACCCTTGGTTTTTGACAATGCAGAGAAATTCCTGGAGAGCACAGATATTTGCACTGCCATATATGCCATGCAAATCTTCAACAGTGGCTGGCCAGCAAACCTTTCTTTCAGATTCTTATGGAAACAACGTTCTAACAGATTTGTGATGTACTTGCTGCAGAAGATTGCCATATATATAACAACACAATGAGGGAGAGGGAGAGCACAAATTCTATACATTATCAGTGTCAAGTTTTTAATACTATCTAATTATGTGTCTATAGGTCATTAGAAAAGTCAAGTCTTCCTATGTAGTGATTGTGATACTCAAGTTTGTTTAATAATTTGTCAATACATATTTGAATGTTTACATGCAGATCCTTAAAAAGAAAATCTGGATTTTATGGTATCTATGTTAAAATTCTGAATGCTTTTATTTGGGGTTGGTAAATTAAGAGTAAGATGTGTAAAGTTAGAGATTAACAA
>Glyma09g41350.1 sequence type=CDS gene model=Glyma09g41350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGGAGAATGGGACTCTTGTTTCTTGTTGTATTGGGTGCTGCATGGGCTTGTGATGCTAGAGAACTGGCTAAACCTGATCTATTAAGCAAACTAAGCAGAAAACCAGATGCGTGTGCACTTTGTGAAGAATATTCTACTAAGGTACTTGATTATCTGAATGAAAACAAGACCCAGCAAGAGATCATTGACATCCTGCACAACATTTGCCACCAAACTTCCTCTTTTAAGCAGAAGTGCATTACTTTGGTGGACTATTATGCTCCTCTTTTCTTCTTAGAAATAGTTACAATCCAGCCTGGAGAATTCTGCCACAAGGTCAATCTCTGTCAGCTCATTACATATATTTCCTTGCTAGTTCAAGAAGATACCAGTGGGTTTTGCAAAGATACTGTTTCAACTCTATCGGCTAAGTTGAAAGACAGTGACACTAAGCTAGAGATAATTGAGACATCACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTGGAGTATGGACCCTTGGTTTTTGACAATGCAGAGAAATTCCTGGAGAGCACAGATATTTGCACTGCCATATATGCCATGCAAATCTTCAACAGTGGCTGGCCAGCAAACCTTTCTTTCAGATTCTTATGGAAACAACGTTCTAACAGATTTGTGATGTACTTGCTGCAGAAGATTGCCATATATATAACAACACAATGA >Glyma09g41350.2 sequence type=CDS gene model=Glyma09g41350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGGGAGAATGGGACTCTTGTTTCTTGTTGTATTGGGTGCTGCATGGGCTTGTGATGCTAGAGAACTGGCTAAACCTGATCTATTAAGCAAACTAAGCAGAAAACCAGATGCGTGTGCACTTTGTGAAGAATATTCTACTAAGGTACTTGATTATCTGAATGAAAACAAGACCCAGCAAGAGATCATTGACATCCTGCACAACATTTGCCACCAAACTTCCTCTTTTAAGCAGAAGTGCATTACTTTGGTGGACTATTATGCTCCTCTTTTCTTCTTAGAAATAGTTACAATCCAGCCTGGAGAATTCTGCCACAAGGTCAATCTCTGTCAGCTCATTACATATATTTCCTTGCTAGTTCAAGAAGATACCAGTGGGTTTTGCAAAGATACTGTTTCAACTCTATCGGCTAAGTTGAAAGACAGTGACACTAAGCTAGAGATAATTGAGACATCACTGAAGGTGTGCAATTCAGTGGAGAAGTATGCAAATAAGTGCAAGAGAATGGTTTTGGAGTATGGACCCTTGGTTTTTGACAATGCAGAGAAATTCCTGGAGAGCACAGATATTTGCACTGCCATATATGCCATGCAAATCTTCAACAGTGGCTGGCCAGCAAACCTTTCTTTCAGATTCTTATGGAAACAACGTTCTAACAGATTTGTGATGTACTTGCTGCAGAAGATTGCCATATATATAACAACACAATGA
>Glyma09g41350.1 sequence type=predicted peptide gene model=Glyma09g41350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGRMGLLFLVVLGAAWACDARELAKPDLLSKLSRKPDACALCEEYSTKVLDYLNENKTQQEIIDILHNICHQTSSFKQKCITLVDYYAPLFFLEIVTIQPGEFCHKVNLCQLITYISLLVQEDTSGFCKDTVSTLSAKLKDSDTKLEIIETSLKVCNSVEKYANKCKRMVLEYGPLVFDNAEKFLESTDICTAIYAMQIFNSGWPANLSFRFLWKQRSNRFVMYLLQKIAIYITTQ* >Glyma09g41350.2 sequence type=predicted peptide gene model=Glyma09g41350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEGRMGLLFLVVLGAAWACDARELAKPDLLSKLSRKPDACALCEEYSTKVLDYLNENKTQQEIIDILHNICHQTSSFKQKCITLVDYYAPLFFLEIVTIQPGEFCHKVNLCQLITYISLLVQEDTSGFCKDTVSTLSAKLKDSDTKLEIIETSLKVCNSVEKYANKCKRMVLEYGPLVFDNAEKFLESTDICTAIYAMQIFNSGWPANLSFRFLWKQRSNRFVMYLLQKIAIYITTQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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