SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10800 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:3598158-3598514 REVERSE LENGTH=118 | SoyBase | E_val: 2.00E-35 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem initiation | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_B9IAA1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IAA1_POPTR | SoyBase | E_val: 2.00E-80 | ISS |
| UniRef100_Q9SGX2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F20B24.22 n=2 Tax=Arabidopsis thaliana RepID=Q9SGX2_ARATH | SoyBase | E_val: 7.00E-53 | ISS |
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Glyma09g41311 not represented in the dataset |
Glyma09g41311 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.09g276700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma09g41311.1 sequence type=CDS gene model=Glyma09g41311 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACACCTTGAAATCTGTCCATGTTTCCTCAGAAGCCAATCAAACACAAGTCCCCACCAATTCTTTTTCCATGCAAACATTAGATTCATCTGTCCAAAGTTTAGTGAAATCATGGCAGAGAAGGCAAAGATGGCTGCATCTATTCACCAAATCCAGCCCACAAGATTTGAATATTAATAGAGCATTATGGCGTACTCATTTGGCCAATTTTCTGGATTCAACATCGGTTCGCGTGTTTACAATCTCATTGCTCATTGTAGACCTCATCATCACAATCCTTGAGCTATCTTCCTCTCTAGTTTCGTGCGAGCGAAACGTGATGAACAGCGTAGCAGAACAATGTTTCCATTGGATTGGAATTGGCATTCTGAGTTTTCTTTTGGCAAAGACAATGGCTTTGCTAGTGGGGTTAGGCTCTTCATTTTTCAAGCATGTGGGGTATGTTATTGATGGAGTTGTGGCGATAGGGGCTATATTTTTGGAAGCCTTTGTGGTGAGGAAAGGAGGTGGTTTGTTGGTTGTGGTGAGTTTGTGGCGTGTCATTAGAGTTGTGGAGAGTGTCTTTGAGTTGAGTGATGAGGCCATTGAAGCTCAAATTGCAGGGATAGTTTGCCAATTTGAGGCACTCAAAGAAGAAAATATGAGGCTCGTAGGAGTAATATATGAGAAGGACAAGATGATTGAAATGCTCAAGGAAGATTTAGATAAGTGTAGGGAATGA
>Glyma09g41311.1 sequence type=predicted peptide gene model=Glyma09g41311 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNTLKSVHVSSEANQTQVPTNSFSMQTLDSSVQSLVKSWQRRQRWLHLFTKSSPQDLNINRALWRTHLANFLDSTSVRVFTISLLIVDLIITILELSSSLVSCERNVMNSVAEQCFHWIGIGILSFLLAKTMALLVGLGSSFFKHVGYVIDGVVAIGAIFLEAFVVRKGGGLLVVVSLWRVIRVVESVFELSDEAIEAQIAGIVCQFEALKEENMRLVGVIYEKDKMIEMLKEDLDKCRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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