Glyma09g41280 - SoyBase

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Report for Sequence Feature Glyma09g41280

Feature Type:	gene_model
Chromosome:	Gm09
Start:	45985640
stop:	45986800
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma09g41280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06920	AT	Annotation by Michelle Graham. TAIR10: ovate family protein 4 \| chr1:2124854-2125801 REVERSE LENGTH=315	SoyBase	E_val: 7.00E-34	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000652	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04844	PFAM	Protein of unknown function, DUF623	JGI		ISS
UniRef100_G7K0S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plant-specific domain TIGR01568 family protein n=1 Tax=Medicago truncatula RepID=G7K0S1_MEDTR	SoyBase	E_val: 4.00E-64	ISS
UniRef100_UPI0002338D0D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338D0D related cluster n=1 Tax=unknown RepID=UPI0002338D0D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma09g41280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma09g41280

Paralog	Evidence	Comments
Glyma18g44780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma09g41280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.09g276400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma09g41280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma09g41280

Limit To All Plant Sequences

>Glyma09g41280.2   sequence type=CDS   gene model=Glyma09g41280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAACTATAGGTTCAAATTATCAGATATAATCCCCAATGCCTGGTTTTACAAACTCAAGGACATGGGAAAAACAAGAAAGCAAACCCAAACAACTAATTCCAGGAAGAAAAAGCAACCTTCACCAGTCTCAACCACAAAACCATCAAAACCAAAGCAACCCCACCAATACAATCTCAGAAAGTCTTACTATTTCACTAGGGAGCTTACCCCAAATGATAGAATCTACTCCTCACCAACACCAACAAATAACCAAAATGCCAAAGACAACAATTCCCCTGAACCCCCCAGAAAATCATCCAAACAAAGACTGAAGAAAAGAACTTCAAGGACTTCTTCACCTAAGCTTCTTGTTGTCTCTAACAATAACAACTCCTCCTCATCACCACATGATAATAGCTCTACTGAATCTTCAGAGCACCCTGACCCAGAATTCAGAACAGACCGTGTTCTTCCAACCGAGTCATTCGATGAAACGGTTCCTTGGGCAAACTCTTGTGCCTGCAGGGTACACTCCAACACCAAGGACATCATCATTGATGTTGACAACAATTCCATAGCCAGAAAAGATGATAAGCTAGAAGGATATGATTATGAATGTGATTCCTTCTCAGACCTTGTGCTTCCACCAATTGTGACAAAGCCTGCAAAATTCAATGACTTGCTCAGTGATGCCAAGAAGAAAGAAACCAAAACCAGAAGCAAGATGGCTGCACATGAAGAAGAACCAAACCTCAATAAGGGCCCTCTGAGGGTTAAAATTGTGAAGGAAGACACTGCATCAATGAAGGGACAGAAGAACAACTATGGAAGGAGATTCTCTGTGAGTTCTCCTGGAGTGAGGCTTCGGATGAATTCTCCGCGAATCGCCAGCCGGAGAGTTCAGGCAAACGGCCGGAGAAGCGTGTCCTCGGCCGCCGCCGCCGCCGCCGCCCGGAGAAGCCTCTCCGATAGCTTTGCAGTTGTGAAGTCATCACTGAATCCACAGAGGGATTTCAGAGAATCAATGGTGGAGATGATTGTGCAGAACAACATAAGGACATCAAAGGATTTGGAGGATCTTCTAGCTTGCTATCTTTCTTTGAATTCAGATGAGTATCATGATCTCATTATCAAAGTGTTCAAGCAAATATGGTTTGATTTAACTGATAACAATTAG

Predicted protein sequences of Glyma09g41280

Limit To All Plant Sequences

>Glyma09g41280.2   sequence type=predicted peptide   gene model=Glyma09g41280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNYRFKLSDIIPNAWFYKLKDMGKTRKQTQTTNSRKKKQPSPVSTTKPSKPKQPHQYNLRKSYYFTRELTPNDRIYSSPTPTNNQNAKDNNSPEPPRKSSKQRLKKRTSRTSSPKLLVVSNNNNSSSSPHDNSSTESSEHPDPEFRTDRVLPTESFDETVPWANSCACRVHSNTKDIIIDVDNNSIARKDDKLEGYDYECDSFSDLVLPPIVTKPAKFNDLLSDAKKKETKTRSKMAAHEEEPNLNKGPLRVKIVKEDTASMKGQKNNYGRRFSVSSPGVRLRMNSPRIASRRVQANGRRSVSSAAAAAAARRSLSDSFAVVKSSLNPQRDFRESMVEMIVQNNIRTSKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTDNN*

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